CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra037106
(
Brassica rapa
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
Bra037106
T352357_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.819
0.638
WRKY75
M02562_2.00
Arabidopsis thaliana
NRGTCAAM
KTTGACYN
PBM
Weirauch et al.(2014)
pTH8821
0.815
0.586
WRKY75
M07420_2.00
Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY75_col_a
0.815
0.586
WRKY75
M07421_2.00
Arabidopsis thaliana
VAAAGTCAACRNH
DNYGTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY75_colamp_a
0.815
0.586
PK25870.1
M01325_2.00
Cannabis sativa
NRGTCAAM
KTTGACYN
PBM
Lambert et al.(2019)
pTH10156
0.814
0.603
WRKY24
M07426_2.00
Arabidopsis thaliana
NNNAWAGTCAACGN
NCGTTGACTWTNNN
Dap-seq
OMalley et al.(2016)
WRKY24_col_a
0.814
0.603
WRKY24
M07427_2.00
Arabidopsis thaliana
NAWAGTCAACGNH
DNCGTTGACTWTN
Dap-seq
OMalley et al.(2016)
WRKY24_colamp_a
0.814
0.603
WRKY12
M00898_2.00
Arabidopsis thaliana
NHGGTCAACNN
NNGTTGACCDN
PBM
Franco-Zorrilla et al.(2014)
WRKY12
0.811
0.586
WRKY45
M00899_2.00
Arabidopsis thaliana
NNRGTCAAMGN
NCKTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY45
0.808
0.603
WRKY45
M07397_2.00
Arabidopsis thaliana
NAAAAGTCAAMD
HKTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY45_col_a
0.808
0.603
WRKY45
M07398_2.00
Arabidopsis thaliana
MAAAGTCAAMV
BKTTGACTTTK
Dap-seq
OMalley et al.(2016)
WRKY45_colamp_a
0.808
0.603
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra037106.1-P
WRKY
264
321
DDGFRWRKYGQKVVKGNPNPRSYYKCTYTACDVKKHVERGAEDVKFLLVTYDGIHEHD
Links
Other
WRKY
family TFs
Other
Brassica rapa
TFs
510 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy