CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_3g053330
(
Medicago truncatula
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
MTR_3g053330
T353260_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY6
M07377_2.00
Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG
CGTTGACYNDNDHNDNNNH
Dap-seq
OMalley et al.(2016)
WRKY6_col_a
0.889
0.898
WRKY6
M07378_2.00
Arabidopsis thaliana
NNHNWRGTCAACKNH
DNMGTTGACYWNDNN
Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a
0.889
0.898
WRKY42
M07404_2.00
Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN
NNDNNHNNNNHGTTGACYWHN
Dap-seq
OMalley et al.(2016)
WRKY42_col_a
0.879
0.864
WRKY42
M07405_2.00
Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD
HHNDNMGTTGACYWNNNHND
Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a
0.879
0.864
WRKY31
M07408_2.00
Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG
CGTTGACYHNNNNNDNNNN
Dap-seq
OMalley et al.(2016)
WRKY31_col_a
0.878
0.881
WRKY31
M07409_2.00
Arabidopsis thaliana
NHWRGTCAACKNH
DNMGTTGACYWDN
Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a
0.878
0.881
WRKY47
M00732_2.00
Arabidopsis thaliana
NNRGTCAACKN
NMGTTGACYNN
PBM
Chang et al.(2013)
pTH7913
0.875
0.831
WRKY47
M07402_2.00
Arabidopsis thaliana
WRGTCAAMGNHVDK
MHBDNCKTTGACYW
Dap-seq
OMalley et al.(2016)
WRKY47_col_a
0.875
0.831
WRKY47
M07403_2.00
Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN
NNNNDNMGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a
0.875
0.831
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH33882
WRKY
251
309
SDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDRSVLVTTYEGQHNHA
Links
Other
WRKY
family TFs
Other
Medicago truncatula
TFs
651 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_04088
Aegilops tauschii
F775_04088
I
0.000
STOP1
Arabidopsis lyrata
fgenesh2_kg.1__3547__AT1G34370.2
I
0.000
STOP1
Arabidopsis thaliana
AT1G34370
D
0.000
Bostr.1040s0032
Boechera stricta
Bostr.1040s0032
I
0.000
BRADI2G56320
Brachypodium distachyon
BRADI2G56320
I
0.000
Bo8g027000
Brassica oleracea
Bo8g027000
I
0.000
Bra040971
Brassica rapa
Bra040971
I
0.000
PK23301.1
Cannabis sativa
PK23301.1
I
0.000
Cagra.12398s0002
Capsella grandiflora
Cagra.12398s0002
I
0.000
Carubv10008876m.g
Capsella rubella
Carubv10008876m.g
I
0.000
Ca_04300
Cicer arietinum
Ca_04300
I
0.000
Cla016623
Citrullus lanatus
Cla016623
I
0.000
orange1.1g009831m.g
Citrus sinensis
orange1.1g009831m.g
I
0.000
Cucsa.079940
Cucumis sativus
Cucsa.079940
I
0.000
Eucgr.F02627
Eucalyptus grandis
Eucgr.F02627
I
0.000
Thhalv10007411m.g
Eutrema salsugineum
Thhalv10007411m.g
I
0.000
gene27486-v1.0-hybrid
Fragaria vesca
gene27486-v1.0-hybrid
I
0.000
GLYMA16G27280
Glycine max
GLYMA16G27280
I
0.000
GLYMA10G35940
Glycine max
GLYMA10G35940
I
0.000
GLYMA20G31650
Glycine max
GLYMA20G31650
I
0.000
Gorai.006G131700
Gossypium raimondii
Gorai.006G131700
I
0.000
MLOC_10987
Hordeum vulgare
MLOC_10987
I
0.000
LPERR01G33350
Leersia perrieri
LPERR01G33350
I
0.000
Lus10009435.g
Linum usitatissimum
Lus10009435.g
I
0.000
MDP0000199559
Malus domestica
MDP0000199559
I
0.000
MDP0000453148
Malus domestica
MDP0000453148
I
0.000
MDP0000551046
Malus domestica
MDP0000551046
I
0.000
MDP0000141403
Malus domestica
MDP0000141403
I
0.000
MDP0000807856
Malus domestica
MDP0000807856
I
0.000
cassava22193.valid.m1
Manihot esculenta
cassava22193.valid.m1
I
0.000
cassava24483.valid.m1
Manihot esculenta
cassava24483.valid.m1
I
0.000
mgf000060m
Mimulus guttatus
mgf000060m
I
0.000
GSMUA_Achr5G01170_001
Musa acuminata
GSMUA_Achr5G01170_001
I
0.000
OBART01G38810
Oryza barthii
OBART01G38810
I
0.000
OB01G47470
Oryza brachyantha
OB01G47470
I
0.000
ORGLA01G0326400
Oryza glaberrima
ORGLA01G0326400
I
0.000
BGIOSGA004888
Oryza indica
BGIOSGA004888
I
0.000
OLONG_020555
Oryza longistaminata
OLONG_020555
I
0.000
ONIVA01G43630
Oryza nivara
ONIVA01G43630
I
0.000
OPUNC01G37530
Oryza punctata
OPUNC01G37530
I
0.000
ORUFI01G42150
Oryza rufipogon
ORUFI01G42150
I
0.000
OS01G0871200
Oryza sativa
OS01G0871200
I
0.000
Pavir.J14096
Panicum virgatum
Pavir.J14096
I
0.000
Pavir.J06328
Panicum virgatum
Pavir.J06328
I
0.000
Pavir.J12018
Panicum virgatum
Pavir.J12018
I
0.000
POPTR_0019s11520
Populus trichocarpa
POPTR_0019s11520
I
0.000
Pm022201
Prunus mume
Pm022201
I
0.000
PRUPE_ppa004510mg
Prunus persica
PRUPE_ppa004510mg
I
0.000
SapurV1A.0287s0150
Salix purpurea
SapurV1A.0287s0150
I
0.000
SapurV1A.2334s0030
Salix purpurea
SapurV1A.2334s0030
I
0.000
Si001053m.g
Setaria italica
Si001053m.g
I
0.000
Solyc06g065440.1
Solanum lycopersicum
Solyc06g065440.1
I
0.000
Solyc11g017140.1
Solanum lycopersicum
Solyc11g017140.1
I
0.000
PGSC0003DMG400009234
Solanum tuberosum
PGSC0003DMG400009234
I
0.000
PGSC0003DMG400026081
Solanum tuberosum
PGSC0003DMG400026081
I
0.000
Sb03g041170
Sorghum bicolor
Sb03g041170
I
0.000
TCM_036719
Theobroma cacao
TCM_036719
I
0.000
TRAES3BF044200110CFD_g
Triticum aestivum
TRAES3BF044200110CFD_g
I
0.000
Traes_3DL_0284E68CC1
Triticum aestivum
Traes_3DL_0284E68CC1
I
0.000
Traes_3AL_00FAACD5D
Triticum aestivum
Traes_3AL_00FAACD5D
I
0.000
TRIUR3_13796
Triticum urartu
TRIUR3_13796
I
0.000
STOP1
Vitis vinifera
VIT_18s0072g00840
I
0.000
GRMZM2G129428
Zea mays
GRMZM2G129428
I
0.000
GRMZM2G075956
Zea mays
GRMZM2G075956
I
0.000