CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400031140
(
Solanum tuberosum
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
PGSC0003DMG400031140
T354301_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY51
M02568_2.00
Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7478
0.832
0.741
PK25870.1
M01325_2.00
Cannabis sativa
NRGTCAAM
KTTGACYN
PBM
Lambert et al.(2019)
pTH10156
0.821
0.707
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.819
0.603
WRKY50
M07424_2.00
Arabidopsis thaliana
NNAAAAGTCAAMN
NKTTGACTTTTNN
Dap-seq
OMalley et al.(2016)
WRKY50_col_a
0.815
0.638
WRKY50
M07425_2.00
Arabidopsis thaliana
NWAAGTCAANN
NNTTGACTTWN
Dap-seq
OMalley et al.(2016)
WRKY50_colamp_a
0.815
0.638
WRKY71
M07374_2.00
Arabidopsis thaliana
HAAAGTCAAMN
NKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY71_col_a
0.809
0.569
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400079980
WRKY
151
208
DDGYKWRKYGKKKVKTNIYLRNYYKCSSGDCKVKKKVERDGNDSRYLMTTYEGKHNHE
Links
Other
WRKY
family TFs
Other
Solanum tuberosum
TFs
247 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29738.m001041
Ricinus communis
29738.m001041
I
0.000
30167.m000856
Ricinus communis
30167.m000856
I
0.000
30174.m008721
Ricinus communis
30174.m008721
I
0.000
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.000
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.000
Aquca_026_00208
Aquilegia coerulea
Aquca_026_00208
I
0.000
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.000
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.000
Bo2g055640
Brassica oleracea
Bo2g055640
I
0.000
Bo2g061250
Brassica oleracea
Bo2g061250
I
0.000
Bo6g099040
Brassica oleracea
Bo6g099040
I
0.000
Bo6g103670
Brassica oleracea
Bo6g103670
I
0.000
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.000
Bostr.26959s0184
Boechera stricta
Bostr.26959s0184
I
0.000
Bra004097
Brassica rapa
Bra004097
I
0.000
Bra004212
Brassica rapa
Bra004212
I
0.000
Bra034010
Brassica rapa
Bra034010
I
0.000
Bra038350
Brassica rapa
Bra038350
I
0.000
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.000
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.000
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.000
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.000
BRC2
Vitis vinifera
VIT_01s0011g02920
I
0.000
BRC2
Arabidopsis thaliana
AT1G68800
I
0.000
Cagra.1125s0016
Capsella grandiflora
Cagra.1125s0016
I
0.000
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.000
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.000
Carubv10020555m.g
Capsella rubella
Carubv10020555m.g
I
0.000
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
0.000
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
0.000
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.000
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.000
chr1.LjB10L14.10.nc
Lotus japonicus
chr1.LjB10L14.10.nc
I
0.000
chr2.LjB17A04.40.nc
Lotus japonicus
chr2.LjB17A04.40.nc
I
0.000
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.000
chr5.CM0357.550.nc
Lotus japonicus
chr5.CM0357.550.nc
I
0.000
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.000
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
0.000
Cla002355
Citrullus lanatus
Cla002355
I
0.000
Cla007227
Citrullus lanatus
Cla007227
I
0.000
Cla016709
Citrullus lanatus
Cla016709
I
0.000
Cucsa.031600
Cucumis sativus
Cucsa.031600
I
0.000
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
0.000
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.000
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
0.000
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.000
Eucgr.J01466
Eucalyptus grandis
Eucgr.J01466
I
0.000
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.000
evm.TU.supercontig_1401.1
Carica papaya
evm.TU.supercontig_1401.1
I
0.000
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.000
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
0.000
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.000
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.000
GLYMA08G28691
Glycine max
GLYMA08G28691
I
0.000
GLYMA10G39141
Glycine max
GLYMA10G39141
I
0.000
GLYMA13G07475
Glycine max
GLYMA13G07475
I
0.000
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.000
GLYMA18G51581
Glycine max
GLYMA18G51581
I
0.000
GLYMA19G05921
Glycine max
GLYMA19G05921
I
0.000
GLYMA20G28670
Glycine max
GLYMA20G28670
I
0.000
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.000
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.000
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.000
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.000
GRMZM2G031905
Zea mays
GRMZM2G031905
I
0.000
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.000
GRMZM2G062711
Zea mays
GRMZM2G062711
I
0.000
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.000
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.000
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.000
GSMUA_Achr10G25520_001
Musa acuminata
GSMUA_Achr10G25520_001
I
0.000
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.000
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.000
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.000
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.000
Lus10003078.g
Linum usitatissimum
Lus10003078.g
I
0.000
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.000
Lus10034072.g
Linum usitatissimum
Lus10034072.g
I
0.000
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.000
MDP0000173048
Malus domestica
MDP0000173048
I
0.000
MDP0000272980
Malus domestica
MDP0000272980
I
0.000
mgf019480m
Mimulus guttatus
mgf019480m
I
0.000
mgf022233m
Mimulus guttatus
mgf022233m
I
0.000
mgf024687m
Mimulus guttatus
mgf024687m
I
0.000
mgf026636m
Mimulus guttatus
mgf026636m
I
0.000
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.000
MTR_1g103380
Medicago truncatula
MTR_1g103380
I
0.000
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.000
MTR_6g017055
Medicago truncatula
MTR_6g017055
I
0.000
MTR_7g018500
Medicago truncatula
MTR_7g018500
I
0.000
OBART09G10040
Oryza barthii
OBART09G10040
I
0.000
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.000
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.000
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.000
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.000
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.000
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.000
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.000
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.000
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
0.000
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.000
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.000
OS09G0410500
Oryza sativa
OS09G0410500
I
0.000
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.000
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.000
PDK_20s1689851g001
Phoenix dactylifera
PDK_20s1689851g001
I
0.000
PGSC0003DMG400000823
Solanum tuberosum
PGSC0003DMG400000823
I
0.000
PGSC0003DMG400003362
Solanum tuberosum
PGSC0003DMG400003362
I
0.000
PGSC0003DMG400004054
Solanum tuberosum
PGSC0003DMG400004054
N
0.000
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
0.000
PGSC0003DMG400007467
Solanum tuberosum
PGSC0003DMG400007467
I
0.000
PK12240.1
Cannabis sativa
PK12240.1
D
0.000
PK19717.1
Cannabis sativa
PK19717.1
D
0.000
Pm015499
Prunus mume
Pm015499
I
0.000
Pm029002
Prunus mume
Pm029002
I
0.000
Pm030202
Prunus mume
Pm030202
I
0.000
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
0.000
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
0.000
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.000
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.000
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
0.000
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.000
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
0.000
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.000
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
0.000
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.000
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.000
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.000
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.000
Si015230m.g
Setaria italica
Si015230m.g
I
0.000
Si033183m.g
Setaria italica
Si033183m.g
I
0.000
Solyc03g119770.2
Solanum lycopersicum
Solyc03g119770.2
I
0.000
Solyc04g006980.1
Solanum lycopersicum
Solyc04g006980.1
I
0.000
Solyc05g009900.1
Solanum lycopersicum
Solyc05g009900.1
I
0.000
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
0.000
TB1
Oryza sativa
OS03G0706500
D
0.000
TCM_011874
Theobroma cacao
TCM_011874
I
0.000
TCM_012252
Theobroma cacao
TCM_012252
I
0.000
TCM_019518
Theobroma cacao
TCM_019518
I
0.000
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
0.000
TCP1
Arabidopsis thaliana
AT1G67260
D
0.000
TCP1
Vitis vinifera
VIT_14s0083g00150
I
0.000
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
0.000
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.000
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.000
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.000
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.000
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.000