CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
POPTR_0018s11630
(
Populus trichocarpa
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
POPTR_0018s11630
T354425_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK05432.1
M01324_2.00
Cannabis sativa
NNRGTCARH
DYTGACYNN
PBM
Lambert et al.(2019)
pTH11342
0.815
0.604
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0018s11630.1
WRKY
215
271
PDGYNWRKYGQKQVKSPRGSRSYYKCTYFDCCAKKIECSDHSGHVIEIVNKGMHSHD
POPTR_0018s11630.1
WRKY
387
420
GDGYRWRKYGQKMVKGNPHPRFGFYFLNFPCMFD
POPTR_0018s11630.2
WRKY
208
264
PDGYNWRKYGQKQVKSPRGSRSYYKCTYFDCCAKKIECSDHSGHVIEIVNKGMHSHD
POPTR_0018s11630.2
WRKY
380
413
GDGYRWRKYGQKMVKGNPHPRFGFYFLNFPCMFD
POPTR_0018s11630.3
WRKY
211
267
PDGYNWRKYGQKQVKSPRGSRSYYKCTYFDCCAKKIECSDHSGHVIEIVNKGMHSHD
POPTR_0018s11630.3
WRKY
383
416
GDGYRWRKYGQKMVKGNPHPRFGFYFLNFPCMFD
Links
Other
WRKY
family TFs
Other
Populus trichocarpa
TFs
119 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.1152s0100
Salix purpurea
SapurV1A.1152s0100
I
0.843
SapurV1A.4039s0010
Salix purpurea
SapurV1A.4039s0010
I
0.840
Ciclev10008135m.g
Citrus clementina
Ciclev10008135m.g
I
0.839
orange1.1g036653m.g
Citrus sinensis
orange1.1g036653m.g
I
0.839
cassava37656.valid.m1
Manihot esculenta
cassava37656.valid.m1
I
0.837
Lus10036268.g
Linum usitatissimum
Lus10036268.g
I
0.836
WRKY32
Arabidopsis thaliana
AT4G30935
I
0.836
Lus10022150.g
Linum usitatissimum
Lus10022150.g
I
0.836
WRKY32
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7000852
I
0.836
Bostr.7867s0950
Boechera stricta
Bostr.7867s0950
I
0.835
Carubv10006890m.g
Capsella rubella
Carubv10006890m.g
I
0.835
Cagra.0380s0033
Capsella grandiflora
Cagra.0380s0033
I
0.835
Gorai.010G113000
Gossypium raimondii
Gorai.010G113000
I
0.835
POPTR_0006s19850
Populus trichocarpa
POPTR_0006s19850
I
0.835
MDP0000131218
Malus domestica
MDP0000131218
I
0.834
TCM_037060
Theobroma cacao
TCM_037060
I
0.833
Cucsa.093390
Cucumis sativus
Cucsa.093390
I
0.832
WRKY32
Vitis vinifera
VIT_11s0037g00150
I
0.832
Cla019018
Citrullus lanatus
Cla019018
I
0.832
gene10079-v1.0-hybrid
Fragaria vesca
gene10079-v1.0-hybrid
I
0.832
Bo7g114840
Brassica oleracea
Bo7g114840
I
0.832
MDP0000293456
Malus domestica
MDP0000293456
I
0.832
GLYMA02G36510
Glycine max
GLYMA02G36510
I
0.831
mgf012709m
Mimulus guttatus
mgf012709m
I
0.831
PRUPE_ppa004042mg
Prunus persica
PRUPE_ppa004042mg
I
0.831
Thhalv10025126m.g
Eutrema salsugineum
Thhalv10025126m.g
I
0.831
Bra024035
Brassica rapa
Bra024035
I
0.831
Pm027732
Prunus mume
Pm027732
I
0.831
GLYMA17G08170
Glycine max
GLYMA17G08170
I
0.831
Bra010266
Brassica rapa
Bra010266
I
0.830
PK26499.1
Cannabis sativa
PK26499.1
I
0.828
Gorai.001G032200
Gossypium raimondii
Gorai.001G032200
I
0.828
chr4.CM0179.130.nc
Lotus japonicus
chr4.CM0179.130.nc
I
0.826
Bo3g175320
Brassica oleracea
Bo3g175320
I
0.826
Solyc07g005650.2
Solanum lycopersicum
Solyc07g005650.2
I
0.826
chr6.CM0037.700.nc
Lotus japonicus
chr6.CM0037.700.nc
I
0.826
GLYMA12G23950
Glycine max
GLYMA12G23950
I
0.824
Eucgr.C02545
Eucalyptus grandis
Eucgr.C02545
I
0.824
Ca_03331
Cicer arietinum
Ca_03331
I
0.823
Eucgr.C00348
Eucalyptus grandis
Eucgr.C00348
I
0.821
VIT_04s0008g06600
Vitis vinifera
VIT_04s0008g06600
I
0.820
MTR_4g130900
Medicago truncatula
MTR_4g130900
I
0.820
Eucgr.C02481
Eucalyptus grandis
Eucgr.C02481
I
0.819
GLYMA06G27440
Glycine max
GLYMA06G27440
I
0.819
mgf020482m
Mimulus guttatus
mgf020482m
I
0.816
PK05432.1
Cannabis sativa
PK05432.1
D
0.815
Aquca_002_00721
Aquilegia coerulea
Aquca_002_00721
I
0.813
Ca_22090
Cicer arietinum
Ca_22090
I
0.811
PK20695.1
Cannabis sativa
PK20695.1
I
0.811
GLYMA18G49830
Glycine max
GLYMA18G49830
I
0.811
GLYMA08G26230
Glycine max
GLYMA08G26230
I
0.811
GSMUA_Achr7G00610_001
Musa acuminata
GSMUA_Achr7G00610_001
I
0.811
SapurV1A.0001s0200
Salix purpurea
SapurV1A.0001s0200
I
0.811
AMTR_s00023p00102530
Amborella trichopoda
AMTR_s00023p00102530
I
0.811
WRKY58
Vitis vinifera
VIT_14s0108g01280
I
0.811
MTR_7g011820
Medicago truncatula
MTR_7g011820
I
0.811
MDP0000431358
Malus domestica
MDP0000431358
I
0.810
MDP0000648338
Malus domestica
MDP0000648338
I
0.810
VIT_06s0004g07500
Vitis vinifera
VIT_06s0004g07500
I
0.810
AMTR_s00058p00090300
Amborella trichopoda
AMTR_s00058p00090300
I
0.810
SapurV1A.0466s0170
Salix purpurea
SapurV1A.0466s0170
I
0.809
Cucsa.111910
Cucumis sativus
Cucsa.111910
I
0.809
chr2.CM0058.50.nc
Lotus japonicus
chr2.CM0058.50.nc
I
0.809
Aquca_005_00209
Aquilegia coerulea
Aquca_005_00209
I
0.809
Gorai.003G150700
Gossypium raimondii
Gorai.003G150700
I
0.809
MDP0000507805
Malus domestica
MDP0000507805
I
0.809
MDP0000514115
Malus domestica
MDP0000514115
I
0.809
gene28174-v1.0-hybrid
Fragaria vesca
gene28174-v1.0-hybrid
I
0.809
Pm029293
Prunus mume
Pm029293
I
0.809
GLYMA14G38010
Glycine max
GLYMA14G38010
I
0.809
Pm015937
Prunus mume
Pm015937
I
0.809
POPTR_0001s47670
Populus trichocarpa
POPTR_0001s47670
I
0.809
PRUPE_ppa003333mg
Prunus persica
PRUPE_ppa003333mg
I
0.809
Pm000163
Prunus mume
Pm000163
I
0.809
VIT_19s0015g01870
Vitis vinifera
VIT_19s0015g01870
I
0.809
VIT_01s0011g00220
Vitis vinifera
VIT_01s0011g00220
I
0.809
Cla008232
Citrullus lanatus
Cla008232
I
0.809
29717.m000222
Ricinus communis
29717.m000222
I
0.809
29820.m001029
Ricinus communis
29820.m001029
I
0.809
GLYMA02G39870
Glycine max
GLYMA02G39870
I
0.809
PRUPE_ppa004009mg
Prunus persica
PRUPE_ppa004009mg
I
0.809
PRUPE_ppa003809mg
Prunus persica
PRUPE_ppa003809mg
I
0.809
cassava24475.valid.m1
Manihot esculenta
cassava24475.valid.m1
I
0.809
POPTR_0016s13600
Populus trichocarpa
POPTR_0016s13600
I
0.809
cassava22187.valid.m1
Manihot esculenta
cassava22187.valid.m1
I
0.809
cassava1059.valid.m1
Manihot esculenta
cassava1059.valid.m1
I
0.809
cassava22188.valid.m1
Manihot esculenta
cassava22188.valid.m1
I
0.809
OPUNC08G17390
Oryza punctata
OPUNC08G17390
I
0.808
PGSC0003DMG400016769
Solanum tuberosum
PGSC0003DMG400016769
I
0.808
PRUPE_ppa001924mg
Prunus persica
PRUPE_ppa001924mg
I
0.808
OB01G44510
Oryza brachyantha
OB01G44510
I
0.808
GSMUA_Achr11G10010_001
Musa acuminata
GSMUA_Achr11G10010_001
I
0.808
Bo4g187630
Brassica oleracea
Bo4g187630
I
0.808
LjSGA_020468.1
Lotus japonicus
LjSGA_020468.1
I
0.808
PDK_20s1777781g001
Phoenix dactylifera
PDK_20s1777781g001
I
0.808
GLYMA03G33376
Glycine max
GLYMA03G33376
I
0.808
GLYMA04G12830
Glycine max
GLYMA04G12830
I
0.808
MTR_3g009470
Medicago truncatula
MTR_3g009470
I
0.808
GSMUA_Achr11G10700_001
Musa acuminata
GSMUA_Achr11G10700_001
I
0.808
MTR_3g031220
Medicago truncatula
MTR_3g031220
I
0.808
Gorai.012G119600
Gossypium raimondii
Gorai.012G119600
I
0.808
mgf003063m
Mimulus guttatus
mgf003063m
I
0.808
28966.m000524
Ricinus communis
28966.m000524
I
0.808
Eucgr.B03189
Eucalyptus grandis
Eucgr.B03189
I
0.808
gw1.35.201.1
Physcomitrella patens
gw1.35.201.1
I
0.808
gw1.157.36.1
Physcomitrella patens
gw1.157.36.1
I
0.808
cassava400.valid.m1
Manihot esculenta
cassava400.valid.m1
I
0.808
cassava30577.valid.m1
Manihot esculenta
cassava30577.valid.m1
I
0.808
Pm000304
Prunus mume
Pm000304
I
0.808
gene01197-v1.0-hybrid
Fragaria vesca
gene01197-v1.0-hybrid
I
0.808
TCM_021580
Theobroma cacao
TCM_021580
I
0.808
Lus10027139.g
Linum usitatissimum
Lus10027139.g
I
0.808
Lus10032887.g
Linum usitatissimum
Lus10032887.g
I
0.808
Cucsa.041700
Cucumis sativus
Cucsa.041700
I
0.808
VIT_08s0058g00690
Vitis vinifera
VIT_08s0058g00690
I
0.808
Cla004503
Citrullus lanatus
Cla004503
I
0.808
Ca_20508
Cicer arietinum
Ca_20508
I
0.808
Solyc06g066370.2
Solanum lycopersicum
Solyc06g066370.2
I
0.808