CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sb02g022280
(
Sorghum bicolor
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
Sb02g022280
T354506_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY53
M01090_2.00
Arabidopsis thaliana
RGTCAACNN
NNGTTGACY
PBM
Sullivan et al.(2014)
pTH8245
0.835
0.729
WRKY30
M02563_2.00
Arabidopsis thaliana
RGTCAACNNN
NNNGTTGACY
PBM
Weirauch et al.(2014)
pTH7611
0.825
0.695
WRKY30
M07422_2.00
Arabidopsis thaliana
DAAGTCAACGN
NCGTTGACTTH
Dap-seq
OMalley et al.(2016)
WRKY30_col_a
0.825
0.695
WRKY30
M07423_2.00
Arabidopsis thaliana
NNAAGTCAACGNH
DNCGTTGACTTNN
Dap-seq
OMalley et al.(2016)
WRKY30_colamp_a
0.825
0.695
WRKY46
M07395_2.00
Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY46_col_a
0.825
0.678
WRKY46
M07396_2.00
Arabidopsis thaliana
HRAAGTCAACG
CGTTGACTTYD
Dap-seq
OMalley et al.(2016)
WRKY46_colamp_a
0.825
0.678
WRKY70
M07399_2.00
Arabidopsis thaliana
HAAAGTCAACGNN
NNCGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY70_col
0.821
0.593
WRKY55
M07392_2.00
Arabidopsis thaliana
HWAGTCAACGNH
DNCGTTGACTWD
Dap-seq
OMalley et al.(2016)
WRKY55_col_a
0.820
0.644
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb02g022280.1
WRKY
107
167
DDGHSWRKYGQKDILGAKHPRGYYRCTHRHSQGCAATKQVQRTDEDPTSFDVVYLGDHTCV
Links
Other
WRKY
family TFs
Other
Sorghum bicolor
TFs
575 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy