CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm005698
(
Prunus mume
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Pm005698
T355344_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY18
M02560_2.00
Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7360
0.868
0.831
WRKY18
M00900_2.00
Arabidopsis thaliana
NVGTCNN
NNGACBN
PBM
Franco-Zorrilla et al.(2014)
WRKY18
0.868
0.831
WRKY18
M07416_2.00
Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN
Dap-seq
OMalley et al.(2016)
WRKY18_col_a
0.868
0.831
WRKY18
M07417_2.00
Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN
Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a
0.868
0.831
WRKY18
M11465_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY18_Q2
0.868
0.831
WRKY60
M02551_2.00
Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN
PBM
Weirauch et al.(2014)
pTH7379
0.866
0.814
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN
NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.862
0.831
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.862
0.831
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.862
0.831
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.862
0.831
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm005698
WRKY
169
227
KDGYQWRKYGQKVTRDNPSPRAYYKCSFAPSCQVKKKVQKSAENPCVLVATYEGEHNHM
Links
Other
WRKY
family TFs
Other
Prunus mume
TFs
407 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy