cassava36924.valid.m1 (Manihot esculenta)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 cassava36924.valid.m1 T355511_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN

NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.885 0.932
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR

YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.885 0.932
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH

DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.885 0.932
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN

NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.885 0.932
WRKY60
M02551_2.00
Arabidopsis thaliana
NYGGTCAAMNN

NNKTTGACCRN
PBM
Weirauch et al.(2014)
pTH7379
0.873 0.847
WRKY18
M02560_2.00
Arabidopsis thaliana
NNRGTCAANN

NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7360
0.870 0.881
WRKY18
M00900_2.00
Arabidopsis thaliana
NVGTCNN

NNGACBN
PBM
Franco-Zorrilla et al.(2014)
WRKY18
0.870 0.881
WRKY18
M07416_2.00
Arabidopsis thaliana
NNHRGTCAASR

YSTTGACYDNN
Dap-seq
OMalley et al.(2016)
WRKY18_col_a
0.870 0.881
WRKY18
M07417_2.00
Arabidopsis thaliana
NNNHWAGTCAANR

YNTTGACTWDNNN
Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a
0.870 0.881
WRKY18
M11465_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY18_Q2
0.870 0.881
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava36924.valid.m1 WRKY 93 151

Links

Other WRKY family TFs
Other Manihot esculenta TFs

574 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29661.m000923 Ricinus communis 29661.m000923 N 0.000
Aquca_060_00005 Aquilegia coerulea Aquca_060_00005 N 0.000
cassava32963.m1 Manihot esculenta cassava32963.m1 N 0.000
cassava7505.valid.m1 Manihot esculenta cassava7505.valid.m1 N 0.000
Ca_02226 Cicer arietinum Ca_02226 N 0.000
Ca_09352 Cicer arietinum Ca_09352 N 0.000
chr2.CM0168.260.nc Lotus japonicus chr2.CM0168.260.nc N 0.000
Ciclev10025470m.g Citrus clementina Ciclev10025470m.g N 0.000
Cla014238 Citrullus lanatus Cla014238 N 0.000
Cucsa.103160 Cucumis sativus Cucsa.103160 N 0.000
evm.TU.supercontig_6.17 Carica papaya evm.TU.supercontig_6.17 N 0.000
gene05757-v1.0-hybrid Fragaria vesca gene05757-v1.0-hybrid N 0.000
GLYMA01G40180 Glycine max GLYMA01G40180 N 0.000
GLYMA05G22460 Glycine max GLYMA05G22460 N 0.000
GLYMA11G05110 Glycine max GLYMA11G05110 N 0.000
GLYMA17G17400 Glycine max GLYMA17G17400 N 0.000
Gorai.003G030400 Gossypium raimondii Gorai.003G030400 N 0.000
Gorai.007G223500 Gossypium raimondii Gorai.007G223500 N 0.000
Gorai.008G083500 Gossypium raimondii Gorai.008G083500 N 0.000
MDP0000165587 Malus domestica MDP0000165587 N 0.000
MDP0000171602 Malus domestica MDP0000171602 N 0.000
MDP0000687763 Malus domestica MDP0000687763 N 0.000
MDP0000822651 Malus domestica MDP0000822651 N 0.000
MDP0000840369 Malus domestica MDP0000840369 N 0.000
mgf023910m Mimulus guttatus mgf023910m N 0.000
MTR_4g097080 Medicago truncatula MTR_4g097080 N 0.000
MTR_5g015490 Medicago truncatula MTR_5g015490 N 0.000
orange1.1g035867m.g Citrus sinensis orange1.1g035867m.g N 0.000
PGSC0003DMG400021444 Solanum tuberosum PGSC0003DMG400021444 N 0.000
PK04147.1 Cannabis sativa PK04147.1 N 0.000
Pm002381 Prunus mume Pm002381 N 0.000
SHR Populus trichocarpa POPTR_0012s06430 N 0.000
PRUPE_ppa004454mg Prunus persica PRUPE_ppa004454mg N 0.000
SapurV1A.0461s0030 Salix purpurea SapurV1A.0461s0030 N 0.000
Solyc02g092370.1 Solanum lycopersicum Solyc02g092370.1 N 0.000
TCM_000801 Theobroma cacao TCM_000801 N 0.000
SHR Vitis vinifera VIT_07s0129g00030 N 0.000