CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.162810
(
Cucumis sativus
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Cucsa.162810
T355598_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN
NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.863
0.797
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.863
0.797
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.863
0.797
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.863
0.797
WRKY60
M02551_2.00
Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN
PBM
Weirauch et al.(2014)
pTH7379
0.862
0.763
WRKY18
M02560_2.00
Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7360
0.858
0.797
WRKY18
M00900_2.00
Arabidopsis thaliana
NVGTCNN
NNGACBN
PBM
Franco-Zorrilla et al.(2014)
WRKY18
0.858
0.797
WRKY18
M07416_2.00
Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN
Dap-seq
OMalley et al.(2016)
WRKY18_col_a
0.858
0.797
WRKY18
M07417_2.00
Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN
Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a
0.858
0.797
WRKY18
M11465_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY18_Q2
0.858
0.797
WRKY28
M07406_2.00
Arabidopsis thaliana
HAAAGTCAAMNNH
DNNKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY28_col_a
0.817
0.559
WRKY28
M07407_2.00
Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY28_colamp_a
0.817
0.559
WRKY8
M02564_2.00
Arabidopsis thaliana
NRGTCAAHN
NDTTGACYN
PBM
Weirauch et al.(2014)
pTH7554
0.817
0.542
WRKY8
M07428_2.00
Arabidopsis thaliana
NAAAAGTCAACRNHW
WDNYGTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY8_colamp_a
0.817
0.542
WRKY8
M07429_2.00
Arabidopsis thaliana
NNVAAAGTCAACRNH
DNYGTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY8_col
0.817
0.542
WRKY48
M02565_2.00
Arabidopsis thaliana
NNVGTCADNN
NNHTGACBNN
PBM
Weirauch et al.(2014)
pTH7552
0.816
0.542
WRKY71
M07374_2.00
Arabidopsis thaliana
HAAAGTCAAMN
NKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY71_col_a
0.812
0.542
WRKY23
M02556_2.00
Arabidopsis thaliana
RGTCAACG
CGTTGACY
PBM
Weirauch et al.(2014)
pTH7387
0.808
0.559
WRKY23
M01089_2.00
Arabidopsis thaliana
NRGTCAAM
KTTGACYN
PBM
Sullivan et al.(2014)
pTH7671
0.808
0.559
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.162810.1
WRKY
146
204
KDGYQWRKYGQKVTKDNPSPRAYYKCSFAPTCPVKRKVQRSVEEPCYLVATYEGQHNHP
Links
Other
WRKY
family TFs
Other
Cucumis sativus
TFs
813 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy