Bostr.2902s0247 (Boechera stricta)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Bostr.2902s0247 T355839_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY6
M07377_2.00
Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG

CGTTGACYNDNDHNDNNNH
Dap-seq
OMalley et al.(2016)
WRKY6_col_a
0.875 0.864
WRKY6
M07378_2.00
Arabidopsis thaliana
NNHNWRGTCAACKNH

DNMGTTGACYWNDNN
Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a
0.875 0.864
WRKY31
M07408_2.00
Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG

CGTTGACYHNNNNNDNNNN
Dap-seq
OMalley et al.(2016)
WRKY31_col_a
0.873 0.864
WRKY31
M07409_2.00
Arabidopsis thaliana
NHWRGTCAACKNH

DNMGTTGACYWDN
Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a
0.873 0.864
WRKY42
M07404_2.00
Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN

NNDNNHNNNNHGTTGACYWHN
Dap-seq
OMalley et al.(2016)
WRKY42_col_a
0.871 0.847
WRKY42
M07405_2.00
Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD

HHNDNMGTTGACYWNNNHND
Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a
0.871 0.847
WRKY47
M00732_2.00
Arabidopsis thaliana
NNRGTCAACKN

NMGTTGACYNN
PBM
Chang et al.(2013)
pTH7913
0.869 0.847
WRKY47
M07402_2.00
Arabidopsis thaliana
WRGTCAAMGNHVDK

MHBDNCKTTGACYW
Dap-seq
OMalley et al.(2016)
WRKY47_col_a
0.869 0.847
WRKY47
M07403_2.00
Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN

NNNNDNMGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a
0.869 0.847
WRKY60
M02551_2.00
Arabidopsis thaliana
NYGGTCAAMNN

NNKTTGACCRN
PBM
Weirauch et al.(2014)
pTH7379
0.820 0.627
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN

NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.819 0.593
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR

YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.819 0.593
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH

DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.819 0.593
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN

NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.819 0.593
WRKY18
M02560_2.00
Arabidopsis thaliana
NNRGTCAANN

NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7360
0.816 0.644
WRKY18
M00900_2.00
Arabidopsis thaliana
NVGTCNN

NNGACBN
PBM
Franco-Zorrilla et al.(2014)
WRKY18
0.816 0.644
WRKY18
M07416_2.00
Arabidopsis thaliana
NNHRGTCAASR

YSTTGACYDNN
Dap-seq
OMalley et al.(2016)
WRKY18_col_a
0.816 0.644
WRKY18
M07417_2.00
Arabidopsis thaliana
NNNHWAGTCAANR

YNTTGACTWDNNN
Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a
0.816 0.644
WRKY18
M11465_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY18_Q2
0.816 0.644
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.2902s0247.1.p WRKY 236 294

Links

Other WRKY family TFs
Other Boechera stricta TFs

780 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCCAN_19748 Ancylostoma caninum ANCCAN_19748 N 0.000
AFAF009298 Anopheles farauti AFAF009298 N 0.000
ACEP25258 Atta cephalotes ACEP25258 N 0.000
TBX2 Callithrix jacchus ENSCJAG00000001256 I 0.000
EOMES Callithrix jacchus ENSCJAG00000004263 I 0.000
Aan_R011193 Calypte anna Aan_R011193 I 0.000
TBX19 Canis familiaris ENSCAFG00000015268 I 0.000
TBX6 Canis familiaris ENSCAFG00000017092 N 0.000
TBX2 Canis familiaris ENSCAFG00000017745 I 0.000
KGM_01149 Danaus plexippus KGM_01149 N 0.000
DICVIV_06158 Dictyocaulus viviparus DICVIV_06158 N 0.000
DILT_0000604501 Diphyllobothrium latum DILT_0000604501 N 0.000
EEL_0000193401 Elaeophora elaphi EEL_0000193401 N 0.000
TBX21 Erinaceus europaeus ENSEEUG00000008994 N 0.000
ENSFALG00000012218 Ficedula albicollis ENSFALG00000012218 N 0.000
TBX2 Gorilla gorilla ENSGGOG00000009144 I 0.000
HMEL002424 Heliconius melpomene HMEL002424 N 0.000
HelroG89689 Helobdella robusta HelroG89689 N 0.000
HelroG77782 Helobdella robusta HelroG77782 N 0.000
ISCW019280 Ixodes scapularis ISCW019280 N 0.000
ISCW019283 Ixodes scapularis ISCW019283 N 0.000
ENSMMUP00000012907 Macaca fascicularis ENSMMUP00000012907 I 0.000
SFT2D2 Macaca mulatta ENSMMUG00000005283 I 0.000
ENSMPUG00000006418 Mustela putorius furo ENSMPUG00000006418 N 0.000
Tbx4 Mus musculus ENSMUSG00000000094 D 0.000
ENSNLEG00000014917 Nomascus leucogenys ENSNLEG00000014917 I 0.000
Ocbimv22020340m.g Octopus bimaculoides Ocbimv22020340m.g N 0.000
OFLC_0000512101 Onchocerca flexuosa OFLC_0000512101 N 0.000
ENSPANG00000021432 Papio anubis ENSPANG00000021432 N 0.000
ENSPSIG00000006299 Pelodiscus sinensis ENSPSIG00000006299 N 0.000
ENSPFOG00000021683 Poecilia formosa ENSPFOG00000021683 N 0.000
ENSPPYG00000007242 Pongo abelii ENSPPYG00000007242 I 0.000
scaffold432-EXSNAP2012.9 Pristionchus exspectatus scaffold432-EXSNAP2012.9 N 0.000
SSLN_0000647101 Schistocephalus solidus SSLN_0000647101 N 0.000
Smp_163240 Schistosoma mansoni Smp_163240 I 0.000
TBX20 Sorex araneus ENSSARG00000003223 I 0.000
SMUV_0000328301 Syphacia muris SMUV_0000328301 N 0.000