CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0569s0010
(
Capsella grandiflora
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Cagra.0569s0010
T355880_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY8
M02564_2.00
Arabidopsis thaliana
NRGTCAAHN
NDTTGACYN
PBM
Weirauch et al.(2014)
pTH7554
0.797
1.000
WRKY28
M07406_2.00
Arabidopsis thaliana
HAAAGTCAAMNNH
DNNKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY28_col_a
0.797
1.000
WRKY28
M07407_2.00
Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY28_colamp_a
0.797
1.000
WRKY71
M07374_2.00
Arabidopsis thaliana
HAAAGTCAAMN
NKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY71_col_a
0.797
1.000
WRKY8
M07428_2.00
Arabidopsis thaliana
NAAAAGTCAACRNHW
WDNYGTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY8_colamp_a
0.797
1.000
WRKY8
M07429_2.00
Arabidopsis thaliana
NNVAAAGTCAACRNH
DNYGTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY8_col
0.797
1.000
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0569s0010.1.p
WRKY
187
207
EDGYRWRKYGQKAVKNSPYPR
Links
Other
WRKY
family TFs
Other
Capsella grandiflora
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10032012m.g
Citrus clementina
Ciclev10032012m.g
I
0.797
Eucgr.B03165
Eucalyptus grandis
Eucgr.B03165
I
0.797
Eucgr.K01219
Eucalyptus grandis
Eucgr.K01219
I
0.797
Gorai.010G164700
Gossypium raimondii
Gorai.010G164700
I
0.797
Carubv10026746m.g
Capsella rubella
Carubv10026746m.g
I
0.797
Carubv10009934m.g
Capsella rubella
Carubv10009934m.g
I
0.797
Cucsa.239590
Cucumis sativus
Cucsa.239590
I
0.797
Aquca_002_00789
Aquilegia coerulea
Aquca_002_00789
I
0.797
Bostr.8819s0173
Boechera stricta
Bostr.8819s0173
I
0.797
Cagra.5647s0024
Capsella grandiflora
Cagra.5647s0024
I
0.797
Gorai.012G040700
Gossypium raimondii
Gorai.012G040700
I
0.797
Lus10004612.g
Linum usitatissimum
Lus10004612.g
I
0.797
SapurV1A.0354s0060
Salix purpurea
SapurV1A.0354s0060
I
0.797
Thhalv10001240m.g
Eutrema salsugineum
Thhalv10001240m.g
I
0.797
LjSGA_008140.3
Lotus japonicus
LjSGA_008140.3
I
0.797
PDK_20s1303931g001
Phoenix dactylifera
PDK_20s1303931g001
I
0.797
Pavir.J35195
Panicum virgatum
Pavir.J35195
I
0.797
Pavir.J17549
Panicum virgatum
Pavir.J17549
N
0.797
MDP0000118810
Malus domestica
MDP0000118810
I
0.797
MDP0000257129
Malus domestica
MDP0000257129
I
0.797
orange1.1g019375m.g
Citrus sinensis
orange1.1g019375m.g
I
0.797
cassava42343.valid.m1
Manihot esculenta
cassava42343.valid.m1
I
0.797
Pm014610
Prunus mume
Pm014610
I
0.797
Bra012614
Brassica rapa
Bra012614
I
0.797
Bra022033
Brassica rapa
Bra022033
I
0.797
Bra025021
Brassica rapa
Bra025021
I
0.797
Bra040926
Brassica rapa
Bra040926
I
0.797
Bo7g105800
Brassica oleracea
Bo7g105800
I
0.797
Bo7g075300
Brassica oleracea
Bo7g075300
I
0.797
WRKY28
Arabidopsis thaliana
AT4G18170
D
0.797
WRKY8
Arabidopsis thaliana
AT5G46350
D
0.797
Bo2g130010
Brassica oleracea
Bo2g130010
I
0.797
WRKY71
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002413
I
0.797
WRKY8
Arabidopsis lyrata
fgenesh2_kg.8__153__AT5G46350.1
I
0.797
TCM_001885
Theobroma cacao
TCM_001885
I
0.797
TRAES3BF021100090CFD_g
Triticum aestivum
TRAES3BF021100090CFD_g
I
0.797
TRAES3BF021300010CFD_g
Triticum aestivum
TRAES3BF021300010CFD_g
I
0.797
Cla005606
Citrullus lanatus
Cla005606
I
0.797
Solyc02g071130.2
Solanum lycopersicum
Solyc02g071130.2
I
0.797
PRUPE_ppa026831mg
Prunus persica
PRUPE_ppa026831mg
I
0.797
GSMUA_Achr4G02800_001
Musa acuminata
GSMUA_Achr4G02800_001
I
0.797
GSMUA_AchrUn_randomG17570_001
Musa acuminata
GSMUA_AchrUn_randomG17570_001
I
0.797
PGSC0003DMG400009703
Solanum tuberosum
PGSC0003DMG400009703
I
0.797
WRKY71
Arabidopsis thaliana
AT1G29860
D
0.797