Cagra.1111s0008 (Capsella grandiflora)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Cagra.1111s0008 T355889_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY6
M07377_2.00
Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG

CGTTGACYNDNDHNDNNNH
Dap-seq
OMalley et al.(2016)
WRKY6_col_a
0.871 0.881
WRKY6
M07378_2.00
Arabidopsis thaliana
NNHNWRGTCAACKNH

DNMGTTGACYWNDNN
Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a
0.871 0.881
WRKY31
M07408_2.00
Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG

CGTTGACYHNNNNNDNNNN
Dap-seq
OMalley et al.(2016)
WRKY31_col_a
0.869 0.881
WRKY31
M07409_2.00
Arabidopsis thaliana
NHWRGTCAACKNH

DNMGTTGACYWDN
Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a
0.869 0.881
WRKY42
M07404_2.00
Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN

NNDNNHNNNNHGTTGACYWHN
Dap-seq
OMalley et al.(2016)
WRKY42_col_a
0.867 0.864
WRKY42
M07405_2.00
Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD

HHNDNMGTTGACYWNNNHND
Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a
0.867 0.864
WRKY47
M00732_2.00
Arabidopsis thaliana
NNRGTCAACKN

NMGTTGACYNN
PBM
Chang et al.(2013)
pTH7913
0.865 0.864
WRKY47
M07402_2.00
Arabidopsis thaliana
WRGTCAAMGNHVDK

MHBDNCKTTGACYW
Dap-seq
OMalley et al.(2016)
WRKY47_col_a
0.865 0.864
WRKY47
M07403_2.00
Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN

NNNNDNMGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a
0.865 0.864
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN

NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.813 0.627
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR

YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.813 0.627
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH

DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.813 0.627
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN

NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.813 0.627
WRKY18
M02560_2.00
Arabidopsis thaliana
NNRGTCAANN

NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7360
0.810 0.661
WRKY18
M00900_2.00
Arabidopsis thaliana
NVGTCNN

NNGACBN
PBM
Franco-Zorrilla et al.(2014)
WRKY18
0.810 0.661
WRKY18
M07416_2.00
Arabidopsis thaliana
NNHRGTCAASR

YSTTGACYDNN
Dap-seq
OMalley et al.(2016)
WRKY18_col_a
0.810 0.661
WRKY18
M07417_2.00
Arabidopsis thaliana
NNNHWAGTCAANR

YNTTGACTWDNNN
Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a
0.810 0.661
WRKY18
M11465_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY18_Q2
0.810 0.661
WRKY60
M02551_2.00
Arabidopsis thaliana
NYGGTCAAMNN

NNKTTGACCRN
PBM
Weirauch et al.(2014)
pTH7379
0.810 0.627
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1111s0008.1.p WRKY 207 265

Links

Other WRKY family TFs
Other Capsella grandiflora TFs

787 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R004160 Calypte anna Aan_R004160 I 0.000
Afo_R013414 Aptenodytes forsteri Afo_R013414 I 0.000
Brh_R001802 Buceros rhinoceros Brh_R001802 I 0.000
CLOCK Anolis carolinensis ENSACAG00000009335 I 0.000
CLOCK Myotis lucifugus ENSMLUG00000010007 I 0.000
CLOCK Meleagris gallopavo ENSMGAG00000011742 I 0.000
Clock Rattus norvegicus ENSRNOG00000002175 I 0.000
CLOCK Sus scrofa ENSSSCG00000008909 I 0.000
CLOCK Loxodonta africana ENSLAFG00000009558 I 0.000
CLOCK Tupaia belangeri ENSTBEG00000002540 I 0.000
CLOCK Macaca mulatta ENSMMUG00000001919 I 0.000
CLOCK Monodelphis domestica ENSMODG00000020678 I 0.000
CLOCK Pteropus vampyrus ENSPVAG00000008960 I 0.000
Clock Mus musculus ENSMUSG00000029238 D 0.000
CLOCK Procavia capensis ENSPCAG00000001407 I 0.000
CLOCK Ornithorhynchus anatinus ENSOANG00000003801 I 0.000
CLOCK Oryctolagus cuniculus ENSOCUG00000022350 I 0.000
CLOCK Otolemur garnettii ENSOGAG00000012464 I 0.000
CLOCK Gorilla gorilla ENSGGOG00000005753 I 0.000
CLOCK Gallus gallus ENSGALG00000013793 I 0.000
CLOCK Ochotona princeps ENSOPRG00000005292 I 0.000
clock Xenopus tropicalis XB-GENE-495448 I 0.000
CLOCK Bos taurus ENSBTAG00000044044 I 0.000
CLOCK Canis familiaris ENSCAFG00000002140 I 0.000
CLOCK Callithrix jacchus ENSCJAG00000018261 I 0.000
CLOCK Cavia porcellus ENSCPOG00000011807 I 0.000
CLOCK Pan troglodytes ENSPTRG00000016072 I 0.000
CLOCK Vicugna pacos ENSVPAG00000006438 I 0.000
CLOCK Tursiops truncatus ENSTTRG00000000960 I 0.000
CLOCK Dasypus novemcinctus ENSDNOG00000018101 I 0.000
CLOCK Equus caballus ENSECAG00000006331 I 0.000
CLOCK Echinops telfairi ENSETEG00000015604 I 0.000
CLOCK Felis catus ENSFCAG00000001064 I 0.000
CLOCK Homo sapiens ENSG00000134852 D 0.000
clock.L Xenopus laevis XB-GENE-6254406 I 0.000
clocka Oryzias latipes ENSORLG00000004495 I 0.000
clocka Tetraodon nigroviridis ENSTNIG00000004102 I 0.000
clocka Takifugu rubripes ENSTRUG00000001837 I 0.000
clocka Gasterosteus aculeatus ENSGACG00000015939 I 0.000
clocka Danio rerio ENSDARG00000011703 I 0.000
clockb Takifugu rubripes ENSTRUG00000015488 I 0.000
clockb Danio rerio ENSDARG00000003631 I 0.000
clockb Tetraodon nigroviridis ENSTNIG00000017652 I 0.000
ENSAMEG00000018420 Ailuropoda melanoleuca ENSAMEG00000018420 I 0.000
ENSAMXG00000005565 Astyanax mexicanus ENSAMXG00000005565 I 0.000
ENSAMXG00000021792 Astyanax mexicanus ENSAMXG00000021792 I 0.000
ENSAPLG00000007176 Anas platyrhynchos ENSAPLG00000007176 I 0.000
ENSCSAG00000005019 Chlorocebus sabaeus ENSCSAG00000005019 I 0.000
ENSFALG00000003646 Ficedula albicollis ENSFALG00000003646 I 0.000
ENSGMOG00000004825 Gadus morhua ENSGMOG00000004825 I 0.000
ENSLACG00000013436 Latimeria chalumnae ENSLACG00000013436 I 0.000
ENSLOCG00000014043 Lepisosteus oculatus ENSLOCG00000014043 I 0.000
ENSMEUG00000005481 Macropus eugenii ENSMEUG00000005481 I 0.000
ENSMMUP00000002568 Macaca fascicularis ENSMMUP00000002568 I 0.000
ENSMPUG00000005091 Mustela putorius furo ENSMPUG00000005091 I 0.000
ENSNLEG00000008499 Nomascus leucogenys ENSNLEG00000008499 I 0.000
ENSOARG00000001602 Ovis aries ENSOARG00000001602 I 0.000
ENSONIG00000002943 Oreochromis niloticus ENSONIG00000002943 I 0.000
ENSONIG00000008797 Oreochromis niloticus ENSONIG00000008797 I 0.000
ENSP00000370723-D1 Bos grunniens ENSP00000370723-D1 I 0.000
ENSPANG00000006882 Papio anubis ENSPANG00000006882 I 0.000
ENSPFOG00000015083 Poecilia formosa ENSPFOG00000015083 I 0.000
ENSPFOG00000017215 Poecilia formosa ENSPFOG00000017215 I 0.000
ENSPPYG00000014762 Pongo abelii ENSPPYG00000014762 I 0.000
ENSPSIG00000011404 Pelodiscus sinensis ENSPSIG00000011404 I 0.000
ENSSHAG00000005555 Sarcophilus harrisii ENSSHAG00000005555 I 0.000
ENSSTOG00000016179 Ictidomys tridecemlineatus ENSSTOG00000016179 I 0.000
ENSTGUG00000007495 Taeniopygia guttata ENSTGUG00000007495 I 0.000
ENSTSYG00000003546 Tarsius syrichta ENSTSYG00000003546 I 0.000
ENSXMAG00000016928 Xiphophorus maculatus ENSXMAG00000016928 I 0.000
ENSXMAG00000017672 Xiphophorus maculatus ENSXMAG00000017672 I 0.000
Gfo_R010434 Geospiza fortis Gfo_R010434 I 0.000
Myotis_brandtii_Clock_10026771 Myotis brandtii Myotis_brandtii_Clock_10026771 I 0.000
Ogr11799 Ophisaurus gracilis Ogr11799 I 0.000
Pvit_07605 Pogona vitticeps Pvit_07605 I 0.000
SNAPOd2T00001991001 Oikopleura dioica SNAPOd2T00001991001 I 0.000
Tal_R002573 Tyto alba Tal_R002573 I 0.000