CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.2438s0022
(
Capsella grandiflora
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Cagra.2438s0022
T355911_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY51
M02568_2.00
Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7478
0.877
0.966
PK25870.1
M01325_2.00
Cannabis sativa
NRGTCAAM
KTTGACYN
PBM
Lambert et al.(2019)
pTH10156
0.862
0.862
WRKY50
M07424_2.00
Arabidopsis thaliana
NNAAAAGTCAAMN
NKTTGACTTTTNN
Dap-seq
OMalley et al.(2016)
WRKY50_col_a
0.823
0.724
WRKY50
M07425_2.00
Arabidopsis thaliana
NWAAGTCAANN
NNTTGACTTWN
Dap-seq
OMalley et al.(2016)
WRKY50_colamp_a
0.823
0.724
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.2438s0022.1.p
WRKY
110
167
DDGFKWRKYGKKSVKNNINKRNYYKCSSEGCSVKKRVERDGEDAAYVITTYDGVHNHE
Links
Other
WRKY
family TFs
Other
Capsella grandiflora
TFs
248 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy