CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10011619m.g
(
Capsella rubella
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Carubv10011619m.g
T355961_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10011619m
WRKY
340
397
EDGFRWRKYGQKVVKGNPNPRSYFKCTNNDCNVKKHVERGADNFKILVTSYDGIHNHP
Links
Other
WRKY
family TFs
Other
Capsella rubella
TFs
268 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.0001s0017
Capsella grandiflora
Cagra.0001s0017
I
0.882
WRKY10
Arabidopsis thaliana
AT1G55600
I
0.879
WRKY10
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1004208
I
0.874
Bostr.6758s0015
Boechera stricta
Bostr.6758s0015
I
0.864
Bo6g051390
Brassica oleracea
Bo6g051390
I
0.854
Bra037106
Brassica rapa
Bra037106
I
0.854
Thhalv10012199m.g
Eutrema salsugineum
Thhalv10012199m.g
I
0.851
GRMZM2G052671
Zea mays
GRMZM2G052671
I
0.839
Bo3g180960
Brassica oleracea
Bo3g180960
I
0.837
Bo3g180930
Brassica oleracea
Bo3g180930
N
0.835
OLONG_005396
Oryza longistaminata
OLONG_005396
I
0.834
OBART09G14210
Oryza barthii
OBART09G14210
I
0.834
OGLUM09G14860
Oryza glumaepatula
OGLUM09G14860
I
0.834
GRMZM2G151407
Zea mays
GRMZM2G151407
I
0.834
MLOC_58019
Hordeum vulgare
MLOC_58019
I
0.834
OB04G23060
Oryza brachyantha
OB04G23060
I
0.834
ORGLA09G0109100
Oryza glaberrima
ORGLA09G0109100
I
0.834
Si029342m.g
Setaria italica
Si029342m.g
I
0.834
Pavir.Bb02418
Panicum virgatum
Pavir.Bb02418
I
0.834
Pavir.J40119
Panicum virgatum
Pavir.J40119
I
0.834
Sb02g027950
Sorghum bicolor
Sb02g027950
I
0.834
ORUFI09G15250
Oryza rufipogon
ORUFI09G15250
I
0.834
ONIVA04G13890
Oryza nivara
ONIVA04G13890
I
0.834
ONIVA09G14780
Oryza nivara
ONIVA09G14780
I
0.834
OPUNC09G12700
Oryza punctata
OPUNC09G12700
I
0.834
OMERI09G11000
Oryza meridionalis
OMERI09G11000
I
0.834
OS09G0481700
Oryza sativa
OS09G0481700
I
0.834
BGIOSGA029574
Oryza indica
BGIOSGA029574
I
0.834
evm.TU.supercontig_12.196
Carica papaya
evm.TU.supercontig_12.196
I
0.833
orange1.1g011483m.g
Citrus sinensis
orange1.1g011483m.g
I
0.832
Bo3g185420
Brassica oleracea
Bo3g185420
I
0.831
GRMZM2G449681
Zea mays
GRMZM2G449681
I
0.831
Bra030847
Brassica rapa
Bra030847
I
0.831
GLYMA06G37100
Glycine max
GLYMA06G37100
I
0.831
MLOC_67851
Hordeum vulgare
MLOC_67851
I
0.830
Pavir.J13787
Panicum virgatum
Pavir.J13787
I
0.830
Ca_13524
Cicer arietinum
Ca_13524
I
0.829
Lus10026409.g
Linum usitatissimum
Lus10026409.g
I
0.828
Bo6g034690
Brassica oleracea
Bo6g034690
I
0.826
BGIOSGA003851
Oryza indica
BGIOSGA003851
I
0.823
LPERR01G17790
Leersia perrieri
LPERR01G17790
I
0.823
OGLUM01G24490
Oryza glumaepatula
OGLUM01G24490
I
0.823
OBART01G20830
Oryza barthii
OBART01G20830
I
0.823
ONIVA01G23410
Oryza nivara
ONIVA01G23410
I
0.823
OS01G0584900
Oryza sativa
OS01G0584900
I
0.823
OPUNC01G20950
Oryza punctata
OPUNC01G20950
I
0.823
OMERI01G18980
Oryza meridionalis
OMERI01G18980
I
0.823
OLONG_016272
Oryza longistaminata
OLONG_016272
I
0.823
ORUFI01G23500
Oryza rufipogon
ORUFI01G23500
I
0.823
Bra038006
Brassica rapa
Bra038006
I
0.823
Pavir.Eb02454
Panicum virgatum
Pavir.Eb02454
I
0.821
chr2.CM0641.70.nc
Lotus japonicus
chr2.CM0641.70.nc
I
0.821
chr4.CM0333.60.nd
Lotus japonicus
chr4.CM0333.60.nd
I
0.820
SELMODRAFT_59955
Selaginella moellendorffii
SELMODRAFT_59955
I
0.820
OMERI04G23060
Oryza meridionalis
OMERI04G23060
I
0.820
GSMUA_Achr2G16390_001
Musa acuminata
GSMUA_Achr2G16390_001
I
0.820
Si002862m.g
Setaria italica
Si002862m.g
I
0.820
VIT_04s0069g00970
Vitis vinifera
VIT_04s0069g00970
I
0.819
GLYMA17G24700
Glycine max
GLYMA17G24700
I
0.819
Sb03g026170
Sorghum bicolor
Sb03g026170
I
0.819
SELMODRAFT_18136
Selaginella moellendorffii
SELMODRAFT_18136
I
0.819
SELMODRAFT_29247
Selaginella moellendorffii
SELMODRAFT_29247
I
0.819
29739.m003586
Ricinus communis
29739.m003586
I
0.818
PGSC0003DMG400027208
Solanum tuberosum
PGSC0003DMG400027208
I
0.818
Solyc05g053380.2
Solanum lycopersicum
Solyc05g053380.2
I
0.818
Solyc04g051690.2
Solanum lycopersicum
Solyc04g051690.2
I
0.818
PGSC0003DMG400011457
Solanum tuberosum
PGSC0003DMG400011457
I
0.817
Solyc01g058540.2
Solanum lycopersicum
Solyc01g058540.2
I
0.817
orange1.1g031298m.g
Citrus sinensis
orange1.1g031298m.g
I
0.817
TRIUR3_10262
Triticum urartu
TRIUR3_10262
I
0.817
Ciclev10032943m.g
Citrus clementina
Ciclev10032943m.g
I
0.817
Traes_6DL_D29E210A1
Triticum aestivum
Traes_6DL_D29E210A1
I
0.816
Traes_6BL_DD840863A
Triticum aestivum
Traes_6BL_DD840863A
I
0.816
MLOC_12078
Hordeum vulgare
MLOC_12078
I
0.816
Traes_6AL_BA4636569
Triticum aestivum
Traes_6AL_BA4636569
I
0.816
OGLUM09G04670
Oryza glumaepatula
OGLUM09G04670
N
0.815
BGIOSGA030067
Oryza indica
BGIOSGA030067
N
0.815
GLYMA16G03480
Glycine max
GLYMA16G03480
I
0.815
ONIVA09G04150
Oryza nivara
ONIVA09G04150
N
0.815
MDP0000121669
Malus domestica
MDP0000121669
I
0.815
MDP0000788581
Malus domestica
MDP0000788581
I
0.814
SELMODRAFT_49409
Selaginella moellendorffii
SELMODRAFT_49409
I
0.814
MLOC_7470
Hordeum vulgare
MLOC_7470
I
0.814
OB01G30460
Oryza brachyantha
OB01G30460
I
0.814
Traes_3AL_F326C5B8E
Triticum aestivum
Traes_3AL_F326C5B8E
I
0.814
TRAES3BF045500040CFD_g
Triticum aestivum
TRAES3BF045500040CFD_g
I
0.814
gw1.1.699.1
Chlorella vulgaris
gw1.1.699.1
I
0.814
SELMODRAFT_69431
Selaginella moellendorffii
SELMODRAFT_69431
I
0.814
SELMODRAFT_69423
Selaginella moellendorffii
SELMODRAFT_69423
I
0.814
cassava28704.m1
Manihot esculenta
cassava28704.m1
I
0.814
Traes_5AL_E566BD64E
Triticum aestivum
Traes_5AL_E566BD64E
I
0.813
LjSGA_012799.2
Lotus japonicus
LjSGA_012799.2
I
0.813
cassava10657.m1
Manihot esculenta
cassava10657.m1
I
0.813
Pavir.Ea02041
Panicum virgatum
Pavir.Ea02041
I
0.813
GLYMA04G39650
Glycine max
GLYMA04G39650
I
0.813
MLOC_54950
Hordeum vulgare
MLOC_54950
I
0.813
LjSGA_069579.1
Lotus japonicus
LjSGA_069579.1
I
0.813
TRIUR3_07596
Triticum urartu
TRIUR3_07596
I
0.813
GLYMA18G47350
Glycine max
GLYMA18G47350
I
0.812
Ciclev10005203m.g
Citrus clementina
Ciclev10005203m.g
I
0.812
gw1.137.58.1
Physcomitrella patens
gw1.137.58.1
I
0.812
POPTR_0010s15750
Populus trichocarpa
POPTR_0010s15750
I
0.812
Ca_03825
Cicer arietinum
Ca_03825
I
0.812
TCM_014673
Theobroma cacao
TCM_014673
I
0.812
Ca_08086
Cicer arietinum
Ca_08086
I
0.812
Gorai.001G057600
Gossypium raimondii
Gorai.001G057600
I
0.812
orange1.1g017479m.g
Citrus sinensis
orange1.1g017479m.g
I
0.812
LPERR05G04920
Leersia perrieri
LPERR05G04920
I
0.812
PK10734.1
Cannabis sativa
PK10734.1
I
0.812
POPTR_0012s10290
Populus trichocarpa
POPTR_0012s10290
I
0.812
GSMUA_Achr9G29350_001
Musa acuminata
GSMUA_Achr9G29350_001
I
0.811
GSMUA_Achr10G00810_001
Musa acuminata
GSMUA_Achr10G00810_001
I
0.811
GRMZM2G163054
Zea mays
GRMZM2G163054
I
0.811
Sb03g003360
Sorghum bicolor
Sb03g003360
I
0.811
Eucgr.E00096
Eucalyptus grandis
Eucgr.E00096
I
0.811
Si031470m.g
Setaria italica
Si031470m.g
I
0.811
GSMUA_Achr8G02180_001
Musa acuminata
GSMUA_Achr8G02180_001
I
0.811
Si023279m.g
Setaria italica
Si023279m.g
I
0.811
ORUFI05G05890
Oryza rufipogon
ORUFI05G05890
I
0.811
OS05G0183100
Oryza sativa
OS05G0183100
I
0.811
Sb09g005700
Sorghum bicolor
Sb09g005700
I
0.811
GSMUA_Achr7G15060_001
Musa acuminata
GSMUA_Achr7G15060_001
I
0.811
BGIOSGA018676
Oryza indica
BGIOSGA018676
I
0.811
OGLUM05G05440
Oryza glumaepatula
OGLUM05G05440
I
0.811
GRMZM2G012724
Zea mays
GRMZM2G012724
I
0.811
GLYMA07G36640
Glycine max
GLYMA07G36640
I
0.811
MDP0000480547
Malus domestica
MDP0000480547
I
0.811
Pavir.J27870
Panicum virgatum
Pavir.J27870
I
0.811
Cucsa.087850
Cucumis sativus
Cucsa.087850
I
0.811
cassava37218.valid.m1
Manihot esculenta
cassava37218.valid.m1
I
0.811
OB05G15280
Oryza brachyantha
OB05G15280
I
0.811
GLYMA17G03950
Glycine max
GLYMA17G03950
I
0.811
OBART05G05560
Oryza barthii
OBART05G05560
I
0.811
OMERI04G05330
Oryza meridionalis
OMERI04G05330
N
0.811
Eucgr.D02326
Eucalyptus grandis
Eucgr.D02326
I
0.811
ONIVA05G06030
Oryza nivara
ONIVA05G06030
I
0.811
OPUNC05G05190
Oryza punctata
OPUNC05G05190
I
0.811
Pavir.Ca01028
Panicum virgatum
Pavir.Ca01028
I
0.811
ORGLA05G0050000
Oryza glaberrima
ORGLA05G0050000
I
0.811
GRMZM2G057116
Zea mays
GRMZM2G057116
I
0.811
OMERI05G05240
Oryza meridionalis
OMERI05G05240
I
0.811
GSMUA_AchrUn_randomG18710_001
Musa acuminata
GSMUA_AchrUn_randomG18710_001
I
0.811
Pavir.J05732
Panicum virgatum
Pavir.J05732
I
0.811
MDP0000836661
Malus domestica
MDP0000836661
I
0.810
Lus10006848.g
Linum usitatissimum
Lus10006848.g
I
0.810
TRAES3BF267200010CFD_g
Triticum aestivum
TRAES3BF267200010CFD_g
I
0.810
WRKY75
Vitis vinifera
VIT_17s0000g01280
I
0.810
MDP0000263768
Malus domestica
MDP0000263768
I
0.810
VIT_04s0008g01470
Vitis vinifera
VIT_04s0008g01470
I
0.810
mgf017130m
Mimulus guttatus
mgf017130m
I
0.810
Solyc08g081630.1
Solanum lycopersicum
Solyc08g081630.1
I
0.810
Aquca_011_00107
Aquilegia coerulea
Aquca_011_00107
I
0.810
PDK_20s1309411g001
Phoenix dactylifera
PDK_20s1309411g001
I
0.810
PGSC0003DMG400012317
Solanum tuberosum
PGSC0003DMG400012317
I
0.810
MTR_1g015140
Medicago truncatula
MTR_1g015140
I
0.810
MTR_3g104750
Medicago truncatula
MTR_3g104750
I
0.810
Bra011861
Brassica rapa
Bra011861
I
0.810
chr1.CM0147.890.nc
Lotus japonicus
chr1.CM0147.890.nc
I
0.810
Bra027480
Brassica rapa
Bra027480
I
0.810
Bra025490
Brassica rapa
Bra025490
I
0.810
Bo4g142200
Brassica oleracea
Bo4g142200
I
0.810
Bo9g059010
Brassica oleracea
Bo9g059010
I
0.810
Sb03g047350
Sorghum bicolor
Sb03g047350
I
0.810
Bo1g002540
Brassica oleracea
Bo1g002540
I
0.810
MTR_7g062220
Medicago truncatula
MTR_7g062220
I
0.809
Cucsa.095090
Cucumis sativus
Cucsa.095090
I
0.809
SapurV1A.0114s0240
Salix purpurea
SapurV1A.0114s0240
I
0.809
OS01G0972800
Oryza sativa
OS01G0972800
I
0.809
Cucsa.066300
Cucumis sativus
Cucsa.066300
I
0.809
OBART01G45510
Oryza barthii
OBART01G45510
I
0.809
Pm002679
Prunus mume
Pm002679
I
0.809
MDP0000253189
Malus domestica
MDP0000253189
I
0.809
ORUFI01G49010
Oryza rufipogon
ORUFI01G49010
I
0.809
29889.m003321
Ricinus communis
29889.m003321
I
0.809
AC165171.2_FG002
Zea mays
AC165171.2_FG002
I
0.809
Bra008858
Brassica rapa
Bra008858
I
0.809
POPTR_0008s10280
Populus trichocarpa
POPTR_0008s10280
I
0.809
gene18438-v1.0-hybrid
Fragaria vesca
gene18438-v1.0-hybrid
I
0.809
Si005025m.g
Setaria italica
Si005025m.g
I
0.809
Gorai.003G150700
Gossypium raimondii
Gorai.003G150700
I
0.809
Gorai.006G265200
Gossypium raimondii
Gorai.006G265200
I
0.809
Gorai.012G119600
Gossypium raimondii
Gorai.012G119600
I
0.809
Bra027768
Brassica rapa
Bra027768
I
0.809
PRUPE_ppa019550mg
Prunus persica
PRUPE_ppa019550mg
I
0.809
Cla018477
Citrullus lanatus
Cla018477
I
0.809
Ciclev10013616m.g
Citrus clementina
Ciclev10013616m.g
I
0.809
GLYMA18G39970
Glycine max
GLYMA18G39970
I
0.809
GSMUA_AchrUn_randomG21800_001
Musa acuminata
GSMUA_AchrUn_randomG21800_001
I
0.809
mgf023486m
Mimulus guttatus
mgf023486m
I
0.809
SapurV1A.0050s0250
Salix purpurea
SapurV1A.0050s0250
I
0.809
Bra027675
Brassica rapa
Bra027675
I
0.809
OMERI01G42290
Oryza meridionalis
OMERI01G42290
I
0.809
GLYMA09G03900
Glycine max
GLYMA09G03900
I
0.809
Bo9g030630
Brassica oleracea
Bo9g030630
I
0.809
GLYMA07G16040
Glycine max
GLYMA07G16040
I
0.809
ORGLA01G0392700
Oryza glaberrima
ORGLA01G0392700
I
0.809
Pavir.Ea04136
Panicum virgatum
Pavir.Ea04136
I
0.809
ONIVA01G51790
Oryza nivara
ONIVA01G51790
I
0.809
GLYMA06G05721
Glycine max
GLYMA06G05721
I
0.809
OPUNC01G44450
Oryza punctata
OPUNC01G44450
I
0.809
WRKY49
Vitis vinifera
VIT_08s0007g00570
I
0.809
VIT_14s0068g01770
Vitis vinifera
VIT_14s0068g01770
I
0.809
GLYMA15G14860
Glycine max
GLYMA15G14860
I
0.809
Ca_09134
Cicer arietinum
Ca_09134
I
0.809
Gorai.012G104800
Gossypium raimondii
Gorai.012G104800
I
0.809
Cla011045
Citrullus lanatus
Cla011045
I
0.809
OGLUM01G49890
Oryza glumaepatula
OGLUM01G49890
I
0.809
BGIOSGA005267
Oryza indica
BGIOSGA005267
I
0.809
Bo9g033920
Brassica oleracea
Bo9g033920
I
0.809
TCM_021911
Theobroma cacao
TCM_021911
I
0.809
Bo3g185390
Brassica oleracea
Bo3g185390
I
0.809
Pavir.Ea00274
Panicum virgatum
Pavir.Ea00274
I
0.808
MDP0000652760
Malus domestica
MDP0000652760
I
0.808
BGIOSGA002237
Oryza indica
BGIOSGA002237
I
0.808
Pavir.J08526
Panicum virgatum
Pavir.J08526
I
0.808
MDP0000134105
Malus domestica
MDP0000134105
I
0.808
MDP0000146390
Malus domestica
MDP0000146390
I
0.808
PDK_20s1331611g001
Phoenix dactylifera
PDK_20s1331611g001
I
0.808
SapurV1A.0099s0270
Salix purpurea
SapurV1A.0099s0270
I
0.808
MDP0000127976
Malus domestica
MDP0000127976
I
0.808
Lus10037785.g
Linum usitatissimum
Lus10037785.g
I
0.808
SapurV1A.0222s0350
Salix purpurea
SapurV1A.0222s0350
I
0.808
SapurV1A.1018s0090
Salix purpurea
SapurV1A.1018s0090
I
0.808
WRKY45
Arabidopsis lyrata
scaffold_300012.1
I
0.808
OBART02G26230
Oryza barthii
OBART02G26230
I
0.808
OB02G33450
Oryza brachyantha
OB02G33450
I
0.808
MTR_2g033820
Medicago truncatula
MTR_2g033820
I
0.808
MLOC_12079
Hordeum vulgare
MLOC_12079
I
0.808
OGLUM01G06090
Oryza glumaepatula
OGLUM01G06090
I
0.808
OGLUM02G26640
Oryza glumaepatula
OGLUM02G26640
I
0.808
ONIVA02G28610
Oryza nivara
ONIVA02G28610
I
0.808
ONIVA01G06360
Oryza nivara
ONIVA01G06360
I
0.808
OMERI02G25630
Oryza meridionalis
OMERI02G25630
I
0.808
OMERI01G05840
Oryza meridionalis
OMERI01G05840
I
0.808
LPERR02G21340
Leersia perrieri
LPERR02G21340
I
0.808
GSMUA_AchrUn_randomG17570_001
Musa acuminata
GSMUA_AchrUn_randomG17570_001
I
0.808
GLYMA03G37940
Glycine max
GLYMA03G37940
I
0.808
GLYMA02G01420
Glycine max
GLYMA02G01420
I
0.808
BRADI2G33540
Brachypodium distachyon
BRADI2G33540
I
0.808
Bra040557
Brassica rapa
Bra040557
I
0.808
GLYMA05G31910
Glycine max
GLYMA05G31910
I
0.808
GLYMA10G01450
Glycine max
GLYMA10G01450
I
0.808
GRMZM2G516301
Zea mays
GRMZM2G516301
I
0.808
GRMZM2G475984
Zea mays
GRMZM2G475984
I
0.808
GLYMA19G40560
Glycine max
GLYMA19G40560
I
0.808
Bo5g153870
Brassica oleracea
Bo5g153870
I
0.808
OPUNC01G05450
Oryza punctata
OPUNC01G05450
I
0.808
cassava43001.valid.m1
Manihot esculenta
cassava43001.valid.m1
I
0.808
cassava36063.valid.m1
Manihot esculenta
cassava36063.valid.m1
I
0.808
cassava33018.m1
Manihot esculenta
cassava33018.m1
I
0.808
Cla022318
Citrullus lanatus
Cla022318
I
0.808
Cucsa.106970
Cucumis sativus
Cucsa.106970
I
0.808
BGIOSGA005924
Oryza indica
BGIOSGA005924
I
0.808
Gorai.007G103600
Gossypium raimondii
Gorai.007G103600
I
0.808
gene05066-v1.0-hybrid
Fragaria vesca
gene05066-v1.0-hybrid
I
0.808
evm.TU.supercontig_9.36
Carica papaya
evm.TU.supercontig_9.36
I
0.808
Cla014896
Citrullus lanatus
Cla014896
I
0.808
TRIUR3_29978
Triticum urartu
TRIUR3_29978
I
0.808
ORUFI02G27620
Oryza rufipogon
ORUFI02G27620
I
0.808
ORUFI01G06050
Oryza rufipogon
ORUFI01G06050
I
0.808
ORGLA01G0052400
Oryza glaberrima
ORGLA01G0052400
I
0.808
OPUNC02G23900
Oryza punctata
OPUNC02G23900
I
0.808
OS01G0186000
Oryza sativa
OS01G0186000
I
0.808
PGSC0003DMG400016769
Solanum tuberosum
PGSC0003DMG400016769
I
0.808
Traes_1AS_1432A2F79
Triticum aestivum
Traes_1AS_1432A2F79
I
0.808
TCM_021400
Theobroma cacao
TCM_021400
I
0.808
Si002621m.g
Setaria italica
Si002621m.g
I
0.808
Gorai.011G201800
Gossypium raimondii
Gorai.011G201800
I
0.808