Carubv10021420m.g (Capsella rubella)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Carubv10021420m.g T355976_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.875 0.847
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.853 0.695
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.847 0.627
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021420m WRKY 93 153

Links

Other WRKY family TFs
Other Capsella rubella TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.890
WRKY63 Arabidopsis thaliana AT1G66600 D 0.875
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.874
WRKY66 Arabidopsis thaliana AT1G80590 I 0.872
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.871
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.870
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.867
WRKY67 Arabidopsis thaliana AT1G66550 I 0.867
WRKY64 Arabidopsis thaliana AT1G66560 I 0.863
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.858
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.857
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.856
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.856
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.856
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.855
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.853
Bo2g095820 Brassica oleracea Bo2g095820 I 0.853
Bra008459 Brassica rapa Bra008459 I 0.853
WRKY38 Arabidopsis thaliana AT5G22570 D 0.853
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.852
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.851
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.851
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.850
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.849
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.847
Bra028918 Brassica rapa Bra028918 I 0.847
WRKY62 Arabidopsis thaliana AT5G01900 D 0.847
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.847
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.847
Bra020196 Brassica rapa Bra020196 I 0.845
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.843
Bo2g024040 Brassica oleracea Bo2g024040 I 0.843
Bra020197 Brassica rapa Bra020197 I 0.843
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.842
Bra008454 Brassica rapa Bra008454 I 0.841
Bo5g068250 Brassica oleracea Bo5g068250 I 0.839
Bra023211 Brassica rapa Bra023211 I 0.839
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.836
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.836
Bra002421 Brassica rapa Bra002421 I 0.832
Bo01002s040 Brassica oleracea Bo01002s040 I 0.832
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.831
Bra008456 Brassica rapa Bra008456 I 0.830
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I 0.829
OB05G17240 Oryza brachyantha OB05G17240 I 0.827
Ca_18932 Cicer arietinum Ca_18932 I 0.826
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.826
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.826
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.824
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.822
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.822
BGIOSGA030113 Oryza indica BGIOSGA030113 I 0.820
ONIVA09G03360 Oryza nivara ONIVA09G03360 I 0.820
LPERR11G00960 Leersia perrieri LPERR11G00960 I 0.819
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.818
OS05G0478800 Oryza sativa OS05G0478800 I 0.818
ONIVA05G08650 Oryza nivara ONIVA05G08650 I 0.818
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I 0.818
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I 0.818
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.818
OPUNC05G07410 Oryza punctata OPUNC05G07410 I 0.818
OBART05G08130 Oryza barthii OBART05G08130 I 0.818
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I 0.818
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.818
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.818
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I 0.818
BGIOSGA017556 Oryza indica BGIOSGA017556 I 0.818
OLONG_019907 Oryza longistaminata OLONG_019907 I 0.818
evm.TU.supercontig_86.64 Carica papaya evm.TU.supercontig_86.64 I 0.817
mgf002542m Mimulus guttatus mgf002542m I 0.817
ORGLA09G0026100 Oryza glaberrima ORGLA09G0026100 I 0.817
LPERR12G01070 Leersia perrieri LPERR12G01070 I 0.816
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.816
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.815
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.815
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.815
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.815
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.814
MTR_2g075610 Medicago truncatula MTR_2g075610 I 0.814
MTR_2g075750 Medicago truncatula MTR_2g075750 I 0.814
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I 0.814
TCM_019689 Theobroma cacao TCM_019689 I 0.813
Si012735m.g Setaria italica Si012735m.g I 0.813
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.813
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.813
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N 0.813
MTR_8g005750 Medicago truncatula MTR_8g005750 I 0.813
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.812
Si025181m.g Setaria italica Si025181m.g I 0.812
ONIVA11G01240 Oryza nivara ONIVA11G01240 I 0.812
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I 0.812
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I 0.812
OBART11G01110 Oryza barthii OBART11G01110 I 0.812
OB05G27830 Oryza brachyantha OB05G27830 I 0.812
F775_02479 Aegilops tauschii F775_02479 N 0.812
BGIOSGA034612 Oryza indica BGIOSGA034612 I 0.812
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I 0.812
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.811
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.811
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.811
OBART05G20330 Oryza barthii OBART05G20330 I 0.811
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.811
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.811
OB05G27850 Oryza brachyantha OB05G27850 I 0.811
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.811
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.811
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.811
Pm003014 Prunus mume Pm003014 I 0.811
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.811
OS05G0478400 Oryza sativa OS05G0478400 I 0.811
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I 0.811
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.811
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.811
mgf009193m Mimulus guttatus mgf009193m I 0.811
OPUNC12G00970 Oryza punctata OPUNC12G00970 N 0.810
OPUNC11G00970 Oryza punctata OPUNC11G00970 N 0.810
BGIOSGA036757 Oryza indica BGIOSGA036757 N 0.810
OS12G0116600 Oryza sativa OS12G0116600 N 0.810
OBART11G01100 Oryza barthii OBART11G01100 N 0.810
gene13547-v1.0-hybrid Fragaria vesca gene13547-v1.0-hybrid I 0.810
ORGLA11G0201900 Oryza glaberrima ORGLA11G0201900 N 0.810
ONIVA11G01050 Oryza nivara ONIVA11G01050 N 0.810
OGLUM12G01400 Oryza glumaepatula OGLUM12G01400 N 0.810
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I 0.810
OS11G0117400 Oryza sativa OS11G0117400 N 0.810
BGIOSGA034613 Oryza indica BGIOSGA034613 N 0.810
ONIVA11G01230 Oryza nivara ONIVA11G01230 N 0.810
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I 0.809
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.809
OBART05G20340 Oryza barthii OBART05G20340 I 0.809
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.809
OMERI11G01520 Oryza meridionalis OMERI11G01520 N 0.809
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.809
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I 0.809
Lus10025133.g Linum usitatissimum Lus10025133.g I 0.809
MDP0000828055 Malus domestica MDP0000828055 I 0.808
Sb08g002560 Sorghum bicolor Sb08g002560 N 0.808
SELMODRAFT_113487 Selaginella moellendorffii SELMODRAFT_113487 I 0.808
SELMODRAFT_29692 Selaginella moellendorffii SELMODRAFT_29692 I 0.808
MTR_5g067680 Medicago truncatula MTR_5g067680 I 0.808