Carubv10021899m.g (Capsella rubella)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Carubv10021899m.g T355979_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.870 0.763
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.848 0.644
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.843 0.678
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021899m WRKY 102 162

Links

Other WRKY family TFs
Other Capsella rubella TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY64 Arabidopsis thaliana AT1G66560 I 0.880
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.877
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.870
WRKY63 Arabidopsis thaliana AT1G66600 D 0.870
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.869
WRKY67 Arabidopsis thaliana AT1G66550 I 0.866
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.864
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.864
Bra008459 Brassica rapa Bra008459 I 0.862
Bo2g095820 Brassica oleracea Bo2g095820 I 0.862
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.861
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.861
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.860
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.859
WRKY66 Arabidopsis thaliana AT1G80590 I 0.858
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.856
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.855
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.855
Bra008454 Brassica rapa Bra008454 I 0.849
WRKY62 Arabidopsis thaliana AT5G01900 D 0.848
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.848
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.843
WRKY38 Arabidopsis thaliana AT5G22570 D 0.843
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.843
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.841
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.839
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.839
Bra028918 Brassica rapa Bra028918 I 0.839
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.839
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.836
Bra002421 Brassica rapa Bra002421 I 0.835
Bo01002s040 Brassica oleracea Bo01002s040 I 0.835
Bo5g068250 Brassica oleracea Bo5g068250 I 0.834
Bra023211 Brassica rapa Bra023211 I 0.834
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.834
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I 0.831
Bra008456 Brassica rapa Bra008456 I 0.830
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.829
Bra020196 Brassica rapa Bra020196 I 0.825
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.825
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.825
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.825
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.825
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.825
OS01G0820700 Oryza sativa OS01G0820700 I 0.825
Lus10014177.g Linum usitatissimum Lus10014177.g I 0.824
Bo2g024040 Brassica oleracea Bo2g024040 I 0.823
Bra020197 Brassica rapa Bra020197 I 0.823
F775_23182 Aegilops tauschii F775_23182 I 0.823
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.823
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.823
OBART01G35310 Oryza barthii OBART01G35310 I 0.823
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.823
OB01G44140 Oryza brachyantha OB01G44140 I 0.823
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.823
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.823
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.822
OB05G17240 Oryza brachyantha OB05G17240 I 0.822
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.822
OB01G44150 Oryza brachyantha OB01G44150 I 0.822
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I 0.821
OPUNC01G34270 Oryza punctata OPUNC01G34270 N 0.820
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.817
GRMZM2G158328 Zea mays GRMZM2G158328 I 0.817
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.817
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.817
Ca_18932 Cicer arietinum Ca_18932 I 0.816
OB05G27850 Oryza brachyantha OB05G27850 I 0.816
MTR_2g075750 Medicago truncatula MTR_2g075750 I 0.816
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I 0.816
GRMZM2G382350 Zea mays GRMZM2G382350 I 0.816
MTR_2g075610 Medicago truncatula MTR_2g075610 I 0.816
OBART01G35350 Oryza barthii OBART01G35350 I 0.815
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.815
ORUFI01G38670 Oryza rufipogon ORUFI01G38670 I 0.815
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.815
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.815
ORGLA01G0291900 Oryza glaberrima ORGLA01G0291900 I 0.815
OBART05G20330 Oryza barthii OBART05G20330 I 0.815
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.815
BGIOSGA004704 Oryza indica BGIOSGA004704 I 0.815
ONIVA01G40370 Oryza nivara ONIVA01G40370 I 0.815
TRIUR3_16097 Triticum urartu TRIUR3_16097 N 0.814
BGIOSGA017556 Oryza indica BGIOSGA017556 I 0.814
SELMODRAFT_113487 Selaginella moellendorffii SELMODRAFT_113487 I 0.814
SELMODRAFT_29692 Selaginella moellendorffii SELMODRAFT_29692 I 0.814
F775_04954 Aegilops tauschii F775_04954 N 0.814
Si012735m.g Setaria italica Si012735m.g I 0.814
Sb03g038170 Sorghum bicolor Sb03g038170 I 0.814
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I 0.814
OPUNC05G07410 Oryza punctata OPUNC05G07410 I 0.814
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.814
OLONG_019907 Oryza longistaminata OLONG_019907 I 0.814
OPUNC05G17990 Oryza punctata OPUNC05G17990 N 0.814
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I 0.814
ONIVA05G08650 Oryza nivara ONIVA05G08650 I 0.814
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I 0.814
OBART05G08130 Oryza barthii OBART05G08130 I 0.814
Lus10022736.g Linum usitatissimum Lus10022736.g I 0.814
OPUNC01G34280 Oryza punctata OPUNC01G34280 I 0.813
OMERI05G18240 Oryza meridionalis OMERI05G18240 N 0.813
BGIOSGA017861 Oryza indica BGIOSGA017861 N 0.813
OS05G0478700 Oryza sativa OS05G0478700 N 0.813
Si004791m.g Setaria italica Si004791m.g I 0.813
OLONG_007113 Oryza longistaminata OLONG_007113 N 0.813
ORUFI05G21590 Oryza rufipogon ORUFI05G21590 N 0.813
MDP0000828055 Malus domestica MDP0000828055 I 0.812
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I 0.812
F775_03183 Aegilops tauschii F775_03183 N 0.812
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I 0.811
TCM_045555 Theobroma cacao TCM_045555 I 0.811
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.811
Si025181m.g Setaria italica Si025181m.g I 0.811
BGIOSGA030113 Oryza indica BGIOSGA030113 I 0.811
WRKY55 Vitis vinifera VIT_13s0067g03130 I 0.811
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.811
Pavir.J31756 Panicum virgatum Pavir.J31756 I 0.811
ONIVA09G03360 Oryza nivara ONIVA09G03360 I 0.811
OMERI01G32490 Oryza meridionalis OMERI01G32490 I 0.810
GLYMA04G40121 Glycine max GLYMA04G40121 I 0.810
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.810
Si002121m.g Setaria italica Si002121m.g I 0.810
GRMZM2G034421 Zea mays GRMZM2G034421 N 0.810
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.810
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.809
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I 0.809
Bo6g066790 Brassica oleracea Bo6g066790 I 0.809
Pavir.Ea03257 Panicum virgatum Pavir.Ea03257 I 0.809
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.809
OS05G0478800 Oryza sativa OS05G0478800 I 0.809
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.809
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.809
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.809
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I 0.809
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I 0.809
Gorai.012G014000 Gossypium raimondii Gorai.012G014000 I 0.809
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I 0.809
TCM_006116 Theobroma cacao TCM_006116 I 0.808
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.808
OB05G27830 Oryza brachyantha OB05G27830 I 0.808
MDP0000460139 Malus domestica MDP0000460139 I 0.808
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I 0.808
Pavir.Eb03562 Panicum virgatum Pavir.Eb03562 I 0.808