Ciclev10031162m.g (Citrus clementina)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Ciclev10031162m.g T356051_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY6
M07377_2.00
Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG

CGTTGACYNDNDHNDNNNH
Dap-seq
OMalley et al.(2016)
WRKY6_col_a
0.854 0.831
WRKY6
M07378_2.00
Arabidopsis thaliana
NNHNWRGTCAACKNH

DNMGTTGACYWNDNN
Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a
0.854 0.831
WRKY31
M07408_2.00
Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG

CGTTGACYHNNNNNDNNNN
Dap-seq
OMalley et al.(2016)
WRKY31_col_a
0.852 0.831
WRKY31
M07409_2.00
Arabidopsis thaliana
NHWRGTCAACKNH

DNMGTTGACYWDN
Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a
0.852 0.831
WRKY42
M07404_2.00
Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN

NNDNNHNNNNHGTTGACYWHN
Dap-seq
OMalley et al.(2016)
WRKY42_col_a
0.850 0.814
WRKY42
M07405_2.00
Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD

HHNDNMGTTGACYWNNNHND
Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a
0.850 0.814
WRKY47
M00732_2.00
Arabidopsis thaliana
NNRGTCAACKN

NMGTTGACYNN
PBM
Chang et al.(2013)
pTH7913
0.848 0.814
WRKY47
M07402_2.00
Arabidopsis thaliana
WRGTCAAMGNHVDK

MHBDNCKTTGACYW
Dap-seq
OMalley et al.(2016)
WRKY47_col_a
0.848 0.814
WRKY47
M07403_2.00
Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN

NNNNDNMGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a
0.848 0.814
WRKY60
M02551_2.00
Arabidopsis thaliana
NYGGTCAAMNN

NNKTTGACCRN
PBM
Weirauch et al.(2014)
pTH7379
0.818 0.661
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN

NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.816 0.610
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR

YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.816 0.610
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH

DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.816 0.610
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN

NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.816 0.610
WRKY18
M02560_2.00
Arabidopsis thaliana
NNRGTCAANN

NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7360
0.814 0.644
WRKY18
M00900_2.00
Arabidopsis thaliana
NVGTCNN

NNGACBN
PBM
Franco-Zorrilla et al.(2014)
WRKY18
0.814 0.644
WRKY18
M07416_2.00
Arabidopsis thaliana
NNHRGTCAASR

YSTTGACYDNN
Dap-seq
OMalley et al.(2016)
WRKY18_col_a
0.814 0.644
WRKY18
M07417_2.00
Arabidopsis thaliana
NNNHWAGTCAANR

YNTTGACTWDNNN
Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a
0.814 0.644
WRKY18
M11465_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY18_Q2
0.814 0.644
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10031162m WRKY 205 263

Links

Other WRKY family TFs
Other Citrus clementina TFs

732 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMXG00000012547 Astyanax mexicanus ENSAMXG00000012547 I 0.000
ENSAPLG00000012761 Anas platyrhynchos ENSAPLG00000012761 I 0.000
ZBTB17 Bos taurus ENSBTAG00000018730 I 0.000
ZBTB17 Canis familiaris ENSCAFG00000016122 I 0.000
ZBTB17 Callithrix jacchus ENSCJAG00000008499 I 0.000
ZBTB17 Cavia porcellus ENSCPOG00000014042 I 0.000
zbtb17 Danio rerio ENSDARG00000074548 I 0.000
ZBTB17 Dasypus novemcinctus ENSDNOG00000001983 I 0.000
ZBTB17 Equus caballus ENSECAG00000024826 I 0.000
ENSFALG00000003542 Ficedula albicollis ENSFALG00000003542 I 0.000
ZBTB17 Homo sapiens ENSG00000116809 D 0.000
zbtb17 Gasterosteus aculeatus ENSGACG00000005273 I 0.000
ENSGALG00000003669 Gallus gallus ENSGALG00000003669 I 0.000
ZBTB17 Gorilla gorilla ENSGGOG00000012058 I 0.000
ENSGMOG00000008387 Gadus morhua ENSGMOG00000008387 I 0.000
ZBTB17 Loxodonta africana ENSLAFG00000004528 I 0.000
ENSMEUG00000000608 Macropus eugenii ENSMEUG00000000608 I 0.000
ZBTB17 Myotis lucifugus ENSMLUG00000025202 I 0.000
ZBTB17 Macaca mulatta ENSMMUG00000008031 I 0.000
ZBTB17 Monodelphis domestica ENSMODG00000003391 I 0.000
Zbtb17 Mus musculus ENSMUSG00000006215 D 0.000
ENSNLEG00000007658 Nomascus leucogenys ENSNLEG00000007658 I 0.000
ZBTB17 Ornithorhynchus anatinus ENSOANG00000008832 I 0.000
ZBTB17 Oryctolagus cuniculus ENSOCUG00000026236 I 0.000
ZBTB17 Otolemur garnettii ENSOGAG00000005075 I 0.000
ENSONIG00000006553 Oreochromis niloticus ENSONIG00000006553 I 0.000
ZBTB17 Ochotona princeps ENSOPRG00000015846 I 0.000
ENSP00000364885 Macaca fascicularis ENSP00000364885 I 0.000
ENSPANG00000015972 Papio anubis ENSPANG00000015972 I 0.000
ZBTB17 Procavia capensis ENSPCAG00000009449 I 0.000
ENSPFOG00000015192 Poecilia formosa ENSPFOG00000015192 I 0.000
ENSPPYG00000001833 Pongo abelii ENSPPYG00000001833 I 0.000
ZBTB17 Pan troglodytes ENSPTRG00000000211 I 0.000
ZBTB17 Pteropus vampyrus ENSPVAG00000013802 I 0.000
Zbtb17 Rattus norvegicus ENSRNOG00000010436 I 0.000
ZBTB17 Sorex araneus ENSSARG00000006626 I 0.000
ENSSTOG00000005696 Ictidomys tridecemlineatus ENSSTOG00000005696 I 0.000
ZBTB17 Taeniopygia guttata ENSTGUG00000002039 I 0.000
zbtb17 Tetraodon nigroviridis ENSTNIG00000010902 I 0.000
zbtb17 Takifugu rubripes ENSTRUG00000003277 I 0.000
ZBTB17 Tursiops truncatus ENSTTRG00000015707 I 0.000
Myotis_brandtii_ZBTB17_10010507 Myotis brandtii Myotis_brandtii_ZBTB17_10010507 I 0.000
Ogr02991 Ophisaurus gracilis Ogr02991 I 0.000
Pvit_06232 Pogona vitticeps Pvit_06232 I 0.000
zbtb17.S Xenopus laevis XB-GENE-6254499 I 0.000
zbtb17 Xenopus tropicalis XB-GENE-940673 I 0.000