CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.I01998
(
Eucalyptus grandis
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Eucgr.I01998
T356121_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY57
M02547_2.00
Arabidopsis thaliana
NNRGTCAAHN
NDTTGACYNN
PBM
Weirauch et al.(2014)
pTH7917
0.829
0.614
WRKY3
M07381_2.00
Arabidopsis thaliana
MAWAGTCAAMR
YKTTGACTWTK
Dap-seq
OMalley et al.(2016)
WRKY3_col_a
0.860
0.774
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.827
0.579
PK05432.1
M01324_2.00
Cannabis sativa
NNRGTCARH
DYTGACYNN
PBM
Lambert et al.(2019)
pTH11342
0.852
0.774
WRKY23
M02556_2.00
Arabidopsis thaliana
RGTCAACG
CGTTGACY
PBM
Weirauch et al.(2014)
pTH7387
0.821
0.596
WRKY20
M07414_2.00
Arabidopsis thaliana
HHHRGTCAAMGNH
DNCKTTGACYDDD
Dap-seq
OMalley et al.(2016)
WRKY20_col_a
0.842
0.713
WRKY23
M01089_2.00
Arabidopsis thaliana
NRGTCAAM
KTTGACYN
PBM
Sullivan et al.(2014)
pTH7671
0.821
0.596
WRKY26
M07418_2.00
Arabidopsis thaliana
MWAAGTCAACGNH
DNCGTTGACTWWK
Dap-seq
OMalley et al.(2016)
WRKY26_col_a
0.840
0.713
WRKY48
M02565_2.00
Arabidopsis thaliana
NNVGTCADNN
NNHTGACBNN
PBM
Weirauch et al.(2014)
pTH7552
0.819
0.579
WRKY26
M07419_2.00
Arabidopsis thaliana
HMWAGTCAAMR
YKTTGACTWKD
Dap-seq
OMalley et al.(2016)
WRKY26_colamp_a
0.840
0.713
Q40090_IPOBA
M11466_2.00
Ipomoea batatas
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPF1_Q2
0.839
0.739
WRKY28
M07406_2.00
Arabidopsis thaliana
HAAAGTCAAMNNH
DNNKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY28_col_a
0.819
0.579
WRKY33
M02554_2.00
Arabidopsis thaliana
NNRGTCHDNN
NNHDGACYNN
PBM
Weirauch et al.(2014)
pTH8183
0.834
0.722
WRKY28
M07407_2.00
Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY28_colamp_a
0.819
0.579
WRKY8
M02564_2.00
Arabidopsis thaliana
NRGTCAAHN
NDTTGACYN
PBM
Weirauch et al.(2014)
pTH7554
0.819
0.561
WRKY33
M07391_2.00
Arabidopsis thaliana
HWWAGTCAAMD
HKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY33_col_a
0.834
0.722
WRKY8
M07428_2.00
Arabidopsis thaliana
NAAAAGTCAACRNHW
WDNYGTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY8_colamp_a
0.819
0.561
WRKY2
M02567_2.00
Arabidopsis thaliana
BRGTCAAM
KTTGACYV
PBM
Weirauch et al.(2014)
pTH8832
0.833
0.739
WRKY8
M07429_2.00
Arabidopsis thaliana
NNVAAAGTCAACRNH
DNYGTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY8_col
0.819
0.561
ZAP1
M02726_2.00
Arabidopsis thaliana
DRCKCGGTCAA
TTGACCGMGYH
SELEX
Mathelier et al.(2014)
MA0589.1
0.829
0.609
WRKY71
M07374_2.00
Arabidopsis thaliana
HAAAGTCAAMN
NKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY71_col_a
0.814
0.579
ZAP1
M11463_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_01
0.829
0.609
WRKY53
M01090_2.00
Arabidopsis thaliana
RGTCAACNN
NNGTTGACY
PBM
Sullivan et al.(2014)
pTH8245
0.813
0.509
WRKY25
M02552_2.00
Arabidopsis thaliana
YRGTCAAM
KTTGACYR
PBM
Weirauch et al.(2014)
pTH8810
0.827
0.635
WRKY14
M00731_2.00
Arabidopsis thaliana
NRGTCAAMNN
NNKTTGACYN
PBM
Chang et al.(2013)
pTH7570
0.812
0.509
WRKY25
M07387_2.00
Arabidopsis thaliana
HWWRGTCAAMR
YKTTGACYWWD
Dap-seq
OMalley et al.(2016)
WRKY25_col_a
0.827
0.635
WRKY25
M07388_2.00
Arabidopsis thaliana
NNNHWRGTCAACRNH
DNYGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY25_colamp_a
0.827
0.635
WRKY14
M07375_2.00
Arabidopsis thaliana
NAAAGTCAACGNN
NNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY14_col_a
0.812
0.509
WRKY14
M07376_2.00
Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY14_colamp_a
0.812
0.509
WRKY12
M00898_2.00
Arabidopsis thaliana
NHGGTCAACNN
NNGTTGACCDN
PBM
Franco-Zorrilla et al.(2014)
WRKY12
0.810
0.579
WRKY29
M02558_2.00
Arabidopsis thaliana
NNNGTCHDNN
NNHDGACNNN
PBM
Weirauch et al.(2014)
pTH9604
0.810
0.474
WRKY29
M07410_2.00
Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY29_col_a
0.810
0.474
WRKY29
M07411_2.00
Arabidopsis thaliana
HWWAGTCAAMDNN
NNHKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY29_colamp_a
0.810
0.474
WRKY27
M02566_2.00
Arabidopsis thaliana
NNGTCHDNN
NNHDGACNN
PBM
Weirauch et al.(2014)
pTH8188
0.809
0.491
WRKY27
M07430_2.00
Arabidopsis thaliana
MAAAGTCAACKNH
DNMGTTGACTTTK
Dap-seq
OMalley et al.(2016)
WRKY27_col_a
0.809
0.491
WRKY27
M07431_2.00
Arabidopsis thaliana
HAAAGTCAACKNH
DNMGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY27_colamp_a
0.809
0.491
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.I01998.1
WRKY
296
352
EDGYNWRKYGQKQVKGCGFPRSYYKCSHLNCSVKKKVEHSLDGRITEITYRGQHQHE
Eucgr.I01998.1
WRKY
474
531
DDGFKWRKYGQKVVKGSSYPRSYYKCTYAGCNVRKHIERAALDPKSVITTYEGKHNHT
Eucgr.I01998.2
WRKY
296
352
EDGYNWRKYGQKQVKGCGFPRSYYKCSHLNCSVKKKVEHSLDGRITEITYRGQHQHE
Links
Other
WRKY
family TFs
Other
Eucalyptus grandis
TFs
1704 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy