gene13546-v1.0-hybrid (Fragaria vesca)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 gene13546-v1.0-hybrid T356209_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY70
M07399_2.00 		Arabidopsis thaliana
HAAAGTCAACGNN
NNCGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY70_col 		0.821 0.644
WRKY46
M07395_2.00 		Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB		 Dap-seq
OMalley et al.(2016)
WRKY46_col_a 		0.814 0.610
WRKY46
M07396_2.00 		Arabidopsis thaliana
HRAAGTCAACG
CGTTGACTTYD		 Dap-seq
OMalley et al.(2016)
WRKY46_colamp_a 		0.814 0.610
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna13546.1-v1.0-hybrid WRKY 136 196

Links

Other WRKY family TFs
Other Fragaria vesca TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm003013 Prunus mume Pm003013 I 0.863
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I 0.861
gene13547-v1.0-hybrid Fragaria vesca gene13547-v1.0-hybrid I 0.860
Pm003015 Prunus mume Pm003015 I 0.860
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.858
PRUPE_ppa025912mg Prunus persica PRUPE_ppa025912mg I 0.854
29915.m000479 Ricinus communis 29915.m000479 I 0.849
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I 0.847
gene13554-v1.0-hybrid Fragaria vesca gene13554-v1.0-hybrid I 0.845
gene13549-v1.0-hybrid Fragaria vesca gene13549-v1.0-hybrid I 0.844
PGSC0003DMG400008391 Solanum tuberosum PGSC0003DMG400008391 I 0.844
Pm003014 Prunus mume Pm003014 I 0.843
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I 0.843
orange1.1g020291m.g Citrus sinensis orange1.1g020291m.g I 0.843
Ciclev10012055m.g Citrus clementina Ciclev10012055m.g I 0.843
PK03324.1 Cannabis sativa PK03324.1 I 0.842
MDP0000754989 Malus domestica MDP0000754989 I 0.841
cassava25180.valid.m1 Manihot esculenta cassava25180.valid.m1 I 0.841
POPTR_0006s10950 Populus trichocarpa POPTR_0006s10950 I 0.840
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I 0.840
TCM_019689 Theobroma cacao TCM_019689 I 0.838
mgf009193m Mimulus guttatus mgf009193m I 0.838
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.837
PGSC0003DMG400029207 Solanum tuberosum PGSC0003DMG400029207 I 0.836
Solyc09g015770.2 Solanum lycopersicum Solyc09g015770.2 I 0.836
Ca_18932 Cicer arietinum Ca_18932 I 0.836
Cla018337 Citrullus lanatus Cla018337 I 0.836
cassava43790.valid.m1 Manihot esculenta cassava43790.valid.m1 I 0.836
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I 0.835
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I 0.835
Eucgr.J00106 Eucalyptus grandis Eucgr.J00106 I 0.833
Ca_09495 Cicer arietinum Ca_09495 I 0.833
GLYMA09G41050 Glycine max GLYMA09G41050 I 0.832
Aquca_027_00037 Aquilegia coerulea Aquca_027_00037 I 0.831
mgf002542m Mimulus guttatus mgf002542m I 0.829
MTR_2g075680 Medicago truncatula MTR_2g075680 I 0.828
29729.m002369 Ricinus communis 29729.m002369 I 0.828
Si022702m.g Setaria italica Si022702m.g I 0.827
Pavir.Cb01173 Panicum virgatum Pavir.Cb01173 I 0.827
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I 0.827
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I 0.827
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I 0.827
Pavir.Ca02012 Panicum virgatum Pavir.Ca02012 I 0.827
Bra003239 Brassica rapa Bra003239 I 0.826
cassava7525.valid.m1 Manihot esculenta cassava7525.valid.m1 I 0.826
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.826
Gorai.009G292600 Gossypium raimondii Gorai.009G292600 I 0.826
cassava7524.valid.m1 Manihot esculenta cassava7524.valid.m1 I 0.826
MTR_2g075690 Medicago truncatula MTR_2g075690 I 0.825
OB03G26140 Oryza brachyantha OB03G26140 I 0.825
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I 0.824
ORUFI05G12710 Oryza rufipogon ORUFI05G12710 I 0.823
ORGLA05G0099400 Oryza glaberrima ORGLA05G0099400 I 0.823
OS05G0322900 Oryza sativa OS05G0322900 I 0.823
OMERI05G10380 Oryza meridionalis OMERI05G10380 I 0.823
OGLUM05G12430 Oryza glumaepatula OGLUM05G12430 I 0.823
GLYMA18G44560 Glycine max GLYMA18G44560 I 0.823
Gorai.013G008300 Gossypium raimondii Gorai.013G008300 I 0.823
OPUNC05G10020 Oryza punctata OPUNC05G10020 I 0.823
Bo6g071110 Brassica oleracea Bo6g071110 I 0.823
OBART05G11710 Oryza barthii OBART05G11710 I 0.823
ONIVA05G12100 Oryza nivara ONIVA05G12100 I 0.823
BGIOSGA019621 Oryza indica BGIOSGA019621 I 0.823
Gorai.010G219200 Gossypium raimondii Gorai.010G219200 I 0.821
evm.TU.supercontig_19.44 Carica papaya evm.TU.supercontig_19.44 I 0.821
WRKY70 Arabidopsis thaliana AT3G56400 D 0.821
Bo8g090820 Brassica oleracea Bo8g090820 I 0.821
TCM_045556 Theobroma cacao TCM_045556 I 0.820
MTR_7g073380 Medicago truncatula MTR_7g073380 I 0.820
Bostr.20505s0112 Boechera stricta Bostr.20505s0112 I 0.820
BRADI2G44270 Brachypodium distachyon BRADI2G44270 I 0.820
LPERR05G09130 Leersia perrieri LPERR05G09130 I 0.820
GLYMA13G34240 Glycine max GLYMA13G34240 I 0.819
Thhalv10006146m.g Eutrema salsugineum Thhalv10006146m.g I 0.819
Bra007243 Brassica rapa Bra007243 I 0.818
cassava23183.valid.m1 Manihot esculenta cassava23183.valid.m1 I 0.818
WRKY70 Arabidopsis lyrata fgenesh2_kg.5__2072__AT3G56400.1 I 0.818
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I 0.817
F775_07376 Aegilops tauschii F775_07376 I 0.817
Si036565m.g Setaria italica Si036565m.g I 0.817
MTR_8g005750 Medicago truncatula MTR_8g005750 I 0.817
Gorai.012G013900 Gossypium raimondii Gorai.012G013900 I 0.816
F775_07845 Aegilops tauschii F775_07845 I 0.816
Bo4g190390 Brassica oleracea Bo4g190390 I 0.815
Bra016974 Brassica rapa Bra016974 I 0.815
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I 0.815
PGSC0003DMG400020608 Solanum tuberosum PGSC0003DMG400020608 I 0.815
OMERI03G14670 Oryza meridionalis OMERI03G14670 I 0.815
ONIVA03G17390 Oryza nivara ONIVA03G17390 I 0.815
OS03G0335200 Oryza sativa OS03G0335200 I 0.815
ORUFI03G16960 Oryza rufipogon ORUFI03G16960 I 0.815
OLONG_024544 Oryza longistaminata OLONG_024544 I 0.815
OGLUM03G16780 Oryza glumaepatula OGLUM03G16780 I 0.815
BGIOSGA012571 Oryza indica BGIOSGA012571 I 0.815
MTR_8g032510 Medicago truncatula MTR_8g032510 N 0.815
OBART03G16400 Oryza barthii OBART03G16400 I 0.815
evm.TU.supercontig_86.64 Carica papaya evm.TU.supercontig_86.64 I 0.814
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.814
Carubv10017349m.g Capsella rubella Carubv10017349m.g I 0.814
MDP0000175240 Malus domestica MDP0000175240 I 0.814
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.814
Sb08g005080 Sorghum bicolor Sb08g005080 I 0.814
TRIUR3_22128 Triticum urartu TRIUR3_22128 I 0.814
WRKY46 Arabidopsis thaliana AT2G46400 D 0.814
GLYMA06G14720 Glycine max GLYMA06G14720 I 0.814
GLYMA04G40130 Glycine max GLYMA04G40130 I 0.814
Solyc03g095770.2 Solanum lycopersicum Solyc03g095770.2 I 0.813
GLYMA16G34590 Glycine max GLYMA16G34590 I 0.813
GRMZM2G025895 Zea mays GRMZM2G025895 I 0.813
GRMZM2G061408 Zea mays GRMZM2G061408 I 0.813
WRKY46 Arabidopsis lyrata fgenesh2_kg.4__2854__AT2G46400.1 I 0.813
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.813
Bra000423 Brassica rapa Bra000423 I 0.812
MDP0000578301 Malus domestica MDP0000578301 I 0.812
BRADI2G30695 Brachypodium distachyon BRADI2G30695 I 0.812
Bostr.25993s0129 Boechera stricta Bostr.25993s0129 I 0.812
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I 0.812
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I 0.812
Cagra.0925s0056 Capsella grandiflora Cagra.0925s0056 I 0.811
Bra014692 Brassica rapa Bra014692 I 0.811
Traes_4AS_0DA136E0E Triticum aestivum Traes_4AS_0DA136E0E I 0.811
Bo00913s010 Brassica oleracea Bo00913s010 I 0.811
F775_32858 Aegilops tauschii F775_32858 I 0.810
OB05G17240 Oryza brachyantha OB05G17240 I 0.810
MTR_0002s1250 Medicago truncatula MTR_0002s1250 I 0.810
Pavir.Bb02088 Panicum virgatum Pavir.Bb02088 I 0.810
Pavir.Ba02545 Panicum virgatum Pavir.Ba02545 I 0.810
GRMZM2G004060 Zea mays GRMZM2G004060 I 0.810
F775_02479 Aegilops tauschii F775_02479 N 0.809
MTR_7g073430 Medicago truncatula MTR_7g073430 I 0.809
POPTR_0013s09470 Populus trichocarpa POPTR_0013s09470 I 0.809
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.809
Bo4g101290 Brassica oleracea Bo4g101290 I 0.808
GRMZM2G163418 Zea mays GRMZM2G163418 I 0.808
Cagra.0483s0080 Capsella grandiflora Cagra.0483s0080 I 0.808
Carubv10023578m.g Capsella rubella Carubv10023578m.g I 0.808
Cla007424 Citrullus lanatus Cla007424 I 0.808
Cagra.0050s0059 Capsella grandiflora Cagra.0050s0059 I 0.808
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.808