gene13547-v1.0-hybrid (Fragaria vesca)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 gene13547-v1.0-hybrid T356210_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY70
M07399_2.00
Arabidopsis thaliana
HAAAGTCAACGNN

NNCGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY70_col
0.836 0.661
WRKY46
M07395_2.00
Arabidopsis thaliana
VAAAGTCAAMG

CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY46_col_a
0.814 0.593
WRKY46
M07396_2.00
Arabidopsis thaliana
HRAAGTCAACG

CGTTGACTTYD
Dap-seq
OMalley et al.(2016)
WRKY46_colamp_a
0.814 0.593
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna13547.1-v1.0-hybrid WRKY 148 208

Links

Other WRKY family TFs
Other Fragaria vesca TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29729.m002369 Ricinus communis 29729.m002369 I 0.841
29915.m000479 Ricinus communis 29915.m000479 I 0.854
Al_scaffold_0004_2305 Arabidopsis lyrata Al_scaffold_0004_2305 I 0.821
AMTR_s00077p00103580 Amborella trichopoda AMTR_s00077p00103580 I 0.816
AMTR_s00077p00103880 Amborella trichopoda AMTR_s00077p00103880 I 0.812
Aquca_027_00037 Aquilegia coerulea Aquca_027_00037 I 0.854
BGIOSGA019620 Oryza indica BGIOSGA019620 I 0.812
BGIOSGA019621 Oryza indica BGIOSGA019621 I 0.817
BGIOSGA030535 Oryza indica BGIOSGA030535 I 0.813
BGIOSGA040489 Oryza indica BGIOSGA040489 I 0.808
Bo00913s010 Brassica oleracea Bo00913s010 I 0.826
Bo2g024040 Brassica oleracea Bo2g024040 I 0.808
Bo3g035140 Brassica oleracea Bo3g035140 I 0.811
Bo3g039240 Brassica oleracea Bo3g039240 I 0.808
Bo4g009270 Brassica oleracea Bo4g009270 I 0.809
Bo4g012750 Brassica oleracea Bo4g012750 I 0.813
Bo4g101290 Brassica oleracea Bo4g101290 I 0.810
Bo4g190390 Brassica oleracea Bo4g190390 I 0.829
Bo6g071110 Brassica oleracea Bo6g071110 I 0.835
Bo8g090820 Brassica oleracea Bo8g090820 I 0.836
Bostr.20505s0112 Boechera stricta Bostr.20505s0112 I 0.830
Bostr.25993s0129 Boechera stricta Bostr.25993s0129 I 0.814
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.812
Bostr.9345s0060 Boechera stricta Bostr.9345s0060 I 0.815
Bra000203 Brassica rapa Bra000203 I 0.811
Bra000423 Brassica rapa Bra000423 I 0.815
Bra003239 Brassica rapa Bra003239 I 0.841
Bra004540 Brassica rapa Bra004540 I 0.809
Bra004586 Brassica rapa Bra004586 I 0.811
Bra007243 Brassica rapa Bra007243 I 0.836
Bra014426 Brassica rapa Bra014426 I 0.809
Bra014692 Brassica rapa Bra014692 I 0.826
Bra016974 Brassica rapa Bra016974 I 0.831
Bra020197 Brassica rapa Bra020197 I 0.808
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.813
BRADI2G30800 Brachypodium distachyon BRADI2G30800 I 0.812
BRADI2G44270 Brachypodium distachyon BRADI2G44270 I 0.818
BRADI3G34850 Brachypodium distachyon BRADI3G34850 I 0.811
BRADI4G28280 Brachypodium distachyon BRADI4G28280 I 0.811
Cagra.0050s0059 Capsella grandiflora Cagra.0050s0059 I 0.808
Cagra.0925s0056 Capsella grandiflora Cagra.0925s0056 I 0.825
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.810
Cagra.1642s0039 Capsella grandiflora Cagra.1642s0039 I 0.820
Carubv10017349m.g Capsella rubella Carubv10017349m.g I 0.828
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.810
Carubv10023578m.g Capsella rubella Carubv10023578m.g I 0.808
Carubv10024972m.g Capsella rubella Carubv10024972m.g I 0.820
cassava23183.valid.m1 Manihot esculenta cassava23183.valid.m1 I 0.832
cassava25180.valid.m1 Manihot esculenta cassava25180.valid.m1 I 0.848
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.859
cassava43790.valid.m1 Manihot esculenta cassava43790.valid.m1 I 0.839
cassava7524.valid.m1 Manihot esculenta cassava7524.valid.m1 I 0.839
cassava7525.valid.m1 Manihot esculenta cassava7525.valid.m1 I 0.839
Ca_03952 Cicer arietinum Ca_03952 I 0.816
Ca_04100 Cicer arietinum Ca_04100 I 0.812
Ca_09495 Cicer arietinum Ca_09495 I 0.829
Ca_18932 Cicer arietinum Ca_18932 I 0.831
chr1.CM0320.400.nd Lotus japonicus chr1.CM0320.400.nd I 0.813
Ciclev10012055m.g Citrus clementina Ciclev10012055m.g I 0.845
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I 0.845
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I 0.809
Cla007424 Citrullus lanatus Cla007424 I 0.822
Cla015244 Citrullus lanatus Cla015244 I 0.812
Cla018337 Citrullus lanatus Cla018337 I 0.851
Cucsa.078810 Cucumis sativus Cucsa.078810 I 0.814
Cucsa.143830 Cucumis sativus Cucsa.143830 I 0.818
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.852
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I 0.830
Eucgr.J00106 Eucalyptus grandis Eucgr.J00106 I 0.832
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I 0.829
evm.TU.supercontig_19.44 Carica papaya evm.TU.supercontig_19.44 I 0.837
evm.TU.supercontig_86.64 Carica papaya evm.TU.supercontig_86.64 I 0.823
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I 0.822
F775_25856 Aegilops tauschii F775_25856 I 0.808
F775_30853 Aegilops tauschii F775_30853 I 0.812
fgenesh1_pm.C_scaffold_4001818 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001818 I 0.821
gene13546-v1.0-hybrid Fragaria vesca gene13546-v1.0-hybrid I 0.860
gene13549-v1.0-hybrid Fragaria vesca gene13549-v1.0-hybrid I 0.851
gene13554-v1.0-hybrid Fragaria vesca gene13554-v1.0-hybrid I 0.852
gene21365-v1.0-hybrid Fragaria vesca gene21365-v1.0-hybrid I 0.820
GLYMA03G00460 Glycine max GLYMA03G00460 I 0.821
GLYMA04G40130 Glycine max GLYMA04G40130 I 0.826
GLYMA06G14720 Glycine max GLYMA06G14720 I 0.827
GLYMA09G41050 Glycine max GLYMA09G41050 I 0.837
GLYMA14G36430 Glycine max GLYMA14G36430 I 0.818
GLYMA14G36438 Glycine max GLYMA14G36438 I 0.810
GLYMA14G36446 Glycine max GLYMA14G36446 I 0.814
GLYMA16G34590 Glycine max GLYMA16G34590 I 0.827
GLYMA18G44560 Glycine max GLYMA18G44560 I 0.828
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I 0.827
Gorai.009G292600 Gossypium raimondii Gorai.009G292600 I 0.833
Gorai.010G219200 Gossypium raimondii Gorai.010G219200 I 0.834
Gorai.012G013900 Gossypium raimondii Gorai.012G013900 I 0.833
Gorai.013G008300 Gossypium raimondii Gorai.013G008300 I 0.836
GRMZM2G025895 Zea mays GRMZM2G025895 I 0.816
GRMZM2G061408 Zea mays GRMZM2G061408 I 0.816
GRMZM2G127064 Zea mays GRMZM2G127064 I 0.810
GRMZM2G139815 Zea mays GRMZM2G139815 I 0.814
GRMZM2G163418 Zea mays GRMZM2G163418 I 0.816
GSMUA_Achr3G25080_001 Musa acuminata GSMUA_Achr3G25080_001 I 0.809
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I 0.808
GSMUA_Achr8G01730_001 Musa acuminata GSMUA_Achr8G01730_001 I 0.808
LjSGA_021425.1 Lotus japonicus LjSGA_021425.1 I 0.809
LPERR03G14340 Leersia perrieri LPERR03G14340 I 0.812
LPERR05G09130 Leersia perrieri LPERR05G09130 I 0.813
LPERR05G09170 Leersia perrieri LPERR05G09170 I 0.812
LPERR08G11030 Leersia perrieri LPERR08G11030 I 0.811
LPERR09G04330 Leersia perrieri LPERR09G04330 I 0.810
Lus10025133.g Linum usitatissimum Lus10025133.g I 0.825
Lus10025216.g Linum usitatissimum Lus10025216.g I 0.825
Lus10029021.g Linum usitatissimum Lus10029021.g I 0.817
Lus10030517.g Linum usitatissimum Lus10030517.g I 0.810
Lus10034244.g Linum usitatissimum Lus10034244.g I 0.815
MDP0000175240 Malus domestica MDP0000175240 I 0.824
MDP0000191017 Malus domestica MDP0000191017 I 0.810
MDP0000315045 Malus domestica MDP0000315045 I 0.811
MDP0000578301 Malus domestica MDP0000578301 I 0.809
MDP0000754989 Malus domestica MDP0000754989 I 0.837
mgf002542m Mimulus guttatus mgf002542m I 0.847
mgf009193m Mimulus guttatus mgf009193m I 0.852
MLOC_44455 Hordeum vulgare MLOC_44455 I 0.808
MLOC_45055 Hordeum vulgare MLOC_45055 I 0.811
MLOC_71897 Hordeum vulgare MLOC_71897 I 0.809
MLOC_74974 Hordeum vulgare MLOC_74974 I 0.811
MTR_2g075680 Medicago truncatula MTR_2g075680 I 0.811
MTR_3g090860 Medicago truncatula MTR_3g090860 I 0.820
MTR_3g093830 Medicago truncatula MTR_3g093830 I 0.817
MTR_7g073380 Medicago truncatula MTR_7g073380 I 0.829
MTR_7g073430 Medicago truncatula MTR_7g073430 I 0.824
MTR_8g005750 Medicago truncatula MTR_8g005750 I 0.832
OB0086G10030 Oryza brachyantha OB0086G10030 I 0.808
OB03G26140 Oryza brachyantha OB03G26140 I 0.814
OB09G14040 Oryza brachyantha OB09G14040 I 0.810
OBART05G11690 Oryza barthii OBART05G11690 I 0.812
OBART05G11710 Oryza barthii OBART05G11710 I 0.816
OBART09G06020 Oryza barthii OBART09G06020 I 0.809
OGLUM05G12420 Oryza glumaepatula OGLUM05G12420 I 0.812
OGLUM05G12430 Oryza glumaepatula OGLUM05G12430 I 0.816
OGLUM07G10380 Oryza glumaepatula OGLUM07G10380 I 0.808
OGLUM09G06630 Oryza glumaepatula OGLUM09G06630 I 0.809
OLONG_021880 Oryza longistaminata OLONG_021880 I 0.812
OMERI05G10350 Oryza meridionalis OMERI05G10350 I 0.812
OMERI05G10380 Oryza meridionalis OMERI05G10380 I 0.816
OMERI08G11390 Oryza meridionalis OMERI08G11390 I 0.808
OMERI09G04750 Oryza meridionalis OMERI09G04750 I 0.809
ONIVA05G12080 Oryza nivara ONIVA05G12080 I 0.812
ONIVA05G12100 Oryza nivara ONIVA05G12100 I 0.817
ONIVA08G13920 Oryza nivara ONIVA08G13920 I 0.808
ONIVA09G05410 Oryza nivara ONIVA09G05410 I 0.813
OPUNC05G10010 Oryza punctata OPUNC05G10010 I 0.812
OPUNC05G10020 Oryza punctata OPUNC05G10020 I 0.816
OPUNC09G05480 Oryza punctata OPUNC09G05480 I 0.810
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I 0.809
orange1.1g020291m.g Citrus sinensis orange1.1g020291m.g I 0.845
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I 0.845
ORGLA05G0099300 Oryza glaberrima ORGLA05G0099300 I 0.812
ORGLA05G0099400 Oryza glaberrima ORGLA05G0099400 I 0.816
ORGLA08G0116200 Oryza glaberrima ORGLA08G0116200 I 0.808
ORUFI05G12690 Oryza rufipogon ORUFI05G12690 I 0.812
ORUFI05G12710 Oryza rufipogon ORUFI05G12710 I 0.816
ORUFI08G15010 Oryza rufipogon ORUFI08G15010 I 0.808
ORUFI09G06720 Oryza rufipogon ORUFI09G06720 I 0.812
OS05G0321900 Oryza sativa OS05G0321900 I 0.812
OS05G0322900 Oryza sativa OS05G0322900 I 0.816
OS08G0386200 Oryza sativa OS08G0386200 I 0.808
OS09G0334500 Oryza sativa OS09G0334500 I 0.812
Pavir.Ba02544 Panicum virgatum Pavir.Ba02544 I 0.809
Pavir.Ba02545 Panicum virgatum Pavir.Ba02545 I 0.817
Pavir.Bb02088 Panicum virgatum Pavir.Bb02088 I 0.817
Pavir.Ca01708 Panicum virgatum Pavir.Ca01708 I 0.812
Pavir.Ca02012 Panicum virgatum Pavir.Ca02012 I 0.820
Pavir.Cb01173 Panicum virgatum Pavir.Cb01173 I 0.820
Pavir.Fa01520 Panicum virgatum Pavir.Fa01520 I 0.809
Pavir.J37854 Panicum virgatum Pavir.J37854 I 0.809
PDK_20s1571901g001 Phoenix dactylifera PDK_20s1571901g001 I 0.810
PGSC0003DMG400008391 Solanum tuberosum PGSC0003DMG400008391 I 0.842
PGSC0003DMG400020608 Solanum tuberosum PGSC0003DMG400020608 I 0.821
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I 0.829
PGSC0003DMG400029207 Solanum tuberosum PGSC0003DMG400029207 I 0.840
PK03324.1 Cannabis sativa PK03324.1 I 0.841
PK10616.1 Cannabis sativa PK10616.1 I 0.817
PK21378.1 Cannabis sativa PK21378.1 I 0.821
Pm003013 Prunus mume Pm003013 I 0.851
Pm003014 Prunus mume Pm003014 I 0.846
Pm003015 Prunus mume Pm003015 I 0.857
Pm019286 Prunus mume Pm019286 I 0.819
Pm024064 Prunus mume Pm024064 I 0.812
POPTR_0006s10950 Populus trichocarpa POPTR_0006s10950 I 0.833
POPTR_0013s09470 Populus trichocarpa POPTR_0013s09470 I 0.823
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I 0.841
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I 0.846
PRUPE_ppa025912mg Prunus persica PRUPE_ppa025912mg I 0.851
PRUPE_ppa026125mg Prunus persica PRUPE_ppa026125mg I 0.817
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I 0.852
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I 0.848
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I 0.844
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I 0.844
Sb02g022280 Sorghum bicolor Sb02g022280 I 0.820
Sb02g022290 Sorghum bicolor Sb02g022290 I 0.812
Sb06g013835 Sorghum bicolor Sb06g013835 I 0.818
SELMODRAFT_113487 Selaginella moellendorffii SELMODRAFT_113487 I 0.809
SELMODRAFT_29692 Selaginella moellendorffii SELMODRAFT_29692 I 0.809
Si015433m.g Setaria italica Si015433m.g I 0.809
Si022702m.g Setaria italica Si022702m.g I 0.820
Si025307m.g Setaria italica Si025307m.g I 0.812
Si030531m.g Setaria italica Si030531m.g I 0.810
Solyc03g095770.2 Solanum lycopersicum Solyc03g095770.2 I 0.818
Solyc09g015770.2 Solanum lycopersicum Solyc09g015770.2 I 0.840
TCM_019689 Theobroma cacao TCM_019689 I 0.839
TCM_045556 Theobroma cacao TCM_045556 I 0.834
Thhalv10001568m.g Eutrema salsugineum Thhalv10001568m.g I 0.810
Thhalv10006146m.g Eutrema salsugineum Thhalv10006146m.g I 0.835
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.808
Thhalv10016713m.g Eutrema salsugineum Thhalv10016713m.g I 0.812
Traes_2AS_6269D889E Triticum aestivum Traes_2AS_6269D889E I 0.810
Traes_2BS_B65714572 Triticum aestivum Traes_2BS_B65714572 I 0.810
Traes_3AL_6E92D4E1F Triticum aestivum Traes_3AL_6E92D4E1F I 0.808
Traes_5BL_0A3D332A8 Triticum aestivum Traes_5BL_0A3D332A8 I 0.812
Traes_5DL_C93641E43 Triticum aestivum Traes_5DL_C93641E43 I 0.812
TRIUR3_29889 Triticum urartu TRIUR3_29889 I 0.808
TRIUR3_30416 Triticum urartu TRIUR3_30416 I 0.812
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.816
WRKY46 Arabidopsis thaliana AT2G46400 D 0.814
WRKY46 Arabidopsis lyrata fgenesh2_kg.4__2854__AT2G46400.1 I 0.812
WRKY54 Arabidopsis thaliana AT2G40750 I 0.818
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.812
WRKY70 Arabidopsis lyrata fgenesh2_kg.5__2072__AT3G56400.1 I 0.834
WRKY70 Arabidopsis thaliana AT3G56400 D 0.836