CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene13549-v1.0-hybrid
(
Fragaria vesca
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
gene13549-v1.0-hybrid
T356211_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY70
M07399_2.00
Arabidopsis thaliana
HAAAGTCAACGNN
NNCGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY70_col
0.852
0.729
WRKY46
M07395_2.00
Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY46_col_a
0.822
0.627
WRKY46
M07396_2.00
Arabidopsis thaliana
HRAAGTCAACG
CGTTGACTTYD
Dap-seq
OMalley et al.(2016)
WRKY46_colamp_a
0.822
0.627
WRKY55
M07392_2.00
Arabidopsis thaliana
HWAGTCAACGNH
DNCGTTGACTWD
Dap-seq
OMalley et al.(2016)
WRKY55_col_a
0.814
0.593
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna13549.1-v1.0-hybrid
WRKY
129
189
DDGHAWRKYGQKQILNAWHPRSYFRCSHKYEQGCKATKQVQKVEDDPSLFRTTYFGNHTCK
Links
Other
WRKY
family TFs
Other
Fragaria vesca
TFs
443 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy