orange1.1g018407m.g (Citrus sinensis)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 orange1.1g018407m.g T356639_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY55
M07392_2.00
Arabidopsis thaliana
HWAGTCAACGNH

DNCGTTGACTWD
Dap-seq
OMalley et al.(2016)
WRKY55_col_a
0.852 0.746
WRKY70
M07399_2.00
Arabidopsis thaliana
HAAAGTCAACGNN

NNCGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY70_col
0.831 0.593
WRKY62
M02561_2.00
Arabidopsis thaliana
TRGTCAAM

KTTGACYA
PBM
Weirauch et al.(2014)
pTH8246
0.826 0.508
WRKY53
M01090_2.00
Arabidopsis thaliana
RGTCAACNN

NNGTTGACY
PBM
Sullivan et al.(2014)
pTH8245
0.821 0.627
WRKY46
M07395_2.00
Arabidopsis thaliana
VAAAGTCAAMG

CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY46_col_a
0.818 0.661
WRKY46
M07396_2.00
Arabidopsis thaliana
HRAAGTCAACG

CGTTGACTTYD
Dap-seq
OMalley et al.(2016)
WRKY46_colamp_a
0.818 0.661
WRKY38
M00901_2.00
Arabidopsis thaliana
NNRGTCAACBN

NVGTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY38
0.811 0.508
WRKY30
M02563_2.00
Arabidopsis thaliana
RGTCAACNNN

NNNGTTGACY
PBM
Weirauch et al.(2014)
pTH7611
0.811 0.559
WRKY30
M07422_2.00
Arabidopsis thaliana
DAAGTCAACGN

NCGTTGACTTH
Dap-seq
OMalley et al.(2016)
WRKY30_col_a
0.811 0.559
WRKY30
M07423_2.00
Arabidopsis thaliana
NNAAGTCAACGNH

DNCGTTGACTTNN
Dap-seq
OMalley et al.(2016)
WRKY30_colamp_a
0.811 0.559
WRKY43
M02555_2.00
Arabidopsis thaliana
NRGTCAAHNN

NNDTTGACYN
PBM
Weirauch et al.(2014)
pTH7373
0.809 0.576
WRKY43
M07393_2.00
Arabidopsis thaliana
NNAAAGTCAACGNN

NNCGTTGACTTTNN
Dap-seq
OMalley et al.(2016)
WRKY43_col_a
0.809 0.576
WRKY43
M07394_2.00
Arabidopsis thaliana
NNNNAAAGTCAACGN

NCGTTGACTTTNNNN
Dap-seq
OMalley et al.(2016)
WRKY43_colamp_a
0.809 0.576
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g018407m WRKY 186 246

Links

Other WRKY family TFs
Other Citrus sinensis TFs

818 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDK_20s1512801g001 Phoenix dactylifera PDK_20s1512801g001 N 0.000
evm.TU.supercontig_21.106 Carica papaya evm.TU.supercontig_21.106 N 0.000
Ciclev10021891m.g Citrus clementina Ciclev10021891m.g N 0.000
mgf007349m Mimulus guttatus mgf007349m N 0.000
mgf003491m Mimulus guttatus mgf003491m N 0.000
Cucsa.078000 Cucumis sativus Cucsa.078000 N 0.000
cassava6828.valid.m1 Manihot esculenta cassava6828.valid.m1 N 0.000
cassava38073.valid.m1 Manihot esculenta cassava38073.valid.m1 N 0.000
30217.m000254 Ricinus communis 30217.m000254 N 0.000
Pm020315 Prunus mume Pm020315 N 0.000
Cla015151 Citrullus lanatus Cla015151 N 0.000
Gorai.001G105100 Gossypium raimondii Gorai.001G105100 N 0.000
Gorai.001G188300 Gossypium raimondii Gorai.001G188300 N 0.000
Gorai.001G231300 Gossypium raimondii Gorai.001G231300 N 0.000
chr1.LjT46N10.100.nd Lotus japonicus chr1.LjT46N10.100.nd N 0.000
Pavir.J28064 Panicum virgatum Pavir.J28064 N 0.000
Pavir.Aa01947 Panicum virgatum Pavir.Aa01947 N 0.000
orange1.1g025914m.g Citrus sinensis orange1.1g025914m.g N 0.000
MDP0000675982 Malus domestica MDP0000675982 N 0.000
MDP0000300382 Malus domestica MDP0000300382 N 0.000
MDP0000129941 Malus domestica MDP0000129941 N 0.000
Lus10022769.g Linum usitatissimum Lus10022769.g N 0.000
Lus10011836.g Linum usitatissimum Lus10011836.g N 0.000
Gorai.007G156300 Gossypium raimondii Gorai.007G156300 N 0.000
Cla002744 Citrullus lanatus Cla002744 N 0.000
Traes_6DS_43372C0A6 Triticum aestivum Traes_6DS_43372C0A6 N 0.000
OLONG_009588 Oryza longistaminata OLONG_009588 N 0.000
OGLUM02G17700 Oryza glumaepatula OGLUM02G17700 N 0.000
OBART02G17450 Oryza barthii OBART02G17450 N 0.000
OB02G25330 Oryza brachyantha OB02G25330 N 0.000
LPERR02G13930 Leersia perrieri LPERR02G13930 N 0.000
GLYMA18G33460 Glycine max GLYMA18G33460 N 0.000
GLYMA08G46250 Glycine max GLYMA08G46250 N 0.000
F775_30629 Aegilops tauschii F775_30629 N 0.000
BRADI3G43822 Brachypodium distachyon BRADI3G43822 N 0.000
BGIOSGA008254 Oryza indica BGIOSGA008254 N 0.000
ONIVA02G18870 Oryza nivara ONIVA02G18870 N 0.000
OPUNC02G15530 Oryza punctata OPUNC02G15530 N 0.000
ORGLA02G0152600 Oryza glaberrima ORGLA02G0152600 N 0.000
Traes_6AL_13895C140 Triticum aestivum Traes_6AL_13895C140 N 0.000
TCM_002835 Theobroma cacao TCM_002835 N 0.000
Solyc09g059510.2 Solanum lycopersicum Solyc09g059510.2 N 0.000
Si018306m.g Setaria italica Si018306m.g N 0.000
Sb04g020150 Sorghum bicolor Sb04g020150 N 0.000
PRUPE_ppa011812mg Prunus persica PRUPE_ppa011812mg N 0.000
POPTR_0002s24750 Populus trichocarpa POPTR_0002s24750 N 0.000
PGSC0003DMG400017485 Solanum tuberosum PGSC0003DMG400017485 N 0.000
OS02G0499000 Oryza sativa OS02G0499000 N 0.000
ORUFI02G18290 Oryza rufipogon ORUFI02G18290 N 0.000
AMTR_s00013p00252260 Amborella trichopoda AMTR_s00013p00252260 N 0.000