Pavir.Ca00459 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Ca00459 T356699_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY63
M02546_2.00
Arabidopsis thaliana
NGGTCAAN

NTTGACCN
PBM
Weirauch et al.(2014)
pTH8182
0.827 0.583
WRKY38
M00901_2.00
Arabidopsis thaliana
NNRGTCAACBN

NVGTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY38
0.827 0.550
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00459.1.p WRKY 132 195
Pavir.Ca00459.2.p WRKY 131 194

Links

Other WRKY family TFs
Other Panicum virgatum TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_00757 Aegilops tauschii F775_00757 I 0.833
F775_22808 Aegilops tauschii F775_22808 I 0.810
F775_07845 Aegilops tauschii F775_07845 I 0.809
F775_07376 Aegilops tauschii F775_07376 I 0.810
F775_04954 Aegilops tauschii F775_04954 N 0.822
F775_04232 Aegilops tauschii F775_04232 N 0.830
F775_03183 Aegilops tauschii F775_03183 N 0.818
F775_02480 Aegilops tauschii F775_02480 N 0.831
F775_23182 Aegilops tauschii F775_23182 I 0.809
F775_23296 Aegilops tauschii F775_23296 N 0.812
F775_02479 Aegilops tauschii F775_02479 N 0.831
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.823
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.828
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.827
WRKY67 Arabidopsis thaliana AT1G66550 I 0.829
WRKY64 Arabidopsis thaliana AT1G66560 I 0.823
WRKY63 Arabidopsis thaliana AT1G66600 D 0.827
WRKY66 Arabidopsis thaliana AT1G80590 I 0.821
WRKY38 Arabidopsis thaliana AT5G22570 D 0.827
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.829
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.819
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.840
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.811
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.810
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.813
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.809
BRADI2G53500 Brachypodium distachyon BRADI2G53500 N 0.812
BRADI4G25717 Brachypodium distachyon BRADI4G25717 N 0.809
BRADI4G44350 Brachypodium distachyon BRADI4G44350 I 0.844
BRADI4G44360 Brachypodium distachyon BRADI4G44360 I 0.833
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.833
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.809
Bo2g024040 Brassica oleracea Bo2g024040 I 0.823
Bo2g095820 Brassica oleracea Bo2g095820 I 0.818
Bo01002s040 Brassica oleracea Bo01002s040 I 0.816
Bo5g068250 Brassica oleracea Bo5g068250 I 0.811
Bra028918 Brassica rapa Bra028918 I 0.820
Bra023211 Brassica rapa Bra023211 I 0.811
Bra002421 Brassica rapa Bra002421 I 0.816
Bra008459 Brassica rapa Bra008459 I 0.818
Bra020196 Brassica rapa Bra020196 I 0.826
Bra020197 Brassica rapa Bra020197 I 0.823
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.826
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.810
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.820
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.820
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.810
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.815
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.826
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.814
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.833
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.822
Ca_12915 Cicer arietinum Ca_12915 I 0.815
Ca_18932 Cicer arietinum Ca_18932 I 0.826
Ca_09495 Cicer arietinum Ca_09495 I 0.813
Cla018337 Citrullus lanatus Cla018337 I 0.817
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I 0.817
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I 0.817
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.813
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I 0.810
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.816
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.817
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.820
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.812
GLYMA09G41050 Glycine max GLYMA09G41050 I 0.814
Gorai.010G219200 Gossypium raimondii Gorai.010G219200 I 0.815
MLOC_74974 Hordeum vulgare MLOC_74974 I 0.823
MLOC_3853 Hordeum vulgare MLOC_3853 N 0.810
MLOC_5971 Hordeum vulgare MLOC_5971 I 0.811
MLOC_71897 Hordeum vulgare MLOC_71897 I 0.809
LPERR12G01080 Leersia perrieri LPERR12G01080 N 0.821
LPERR12G01060 Leersia perrieri LPERR12G01060 N 0.809
LPERR11G00970 Leersia perrieri LPERR11G00970 N 0.821
LPERR11G00960 Leersia perrieri LPERR11G00960 I 0.812
LPERR11G00950 Leersia perrieri LPERR11G00950 N 0.809
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.808
LPERR08G11030 Leersia perrieri LPERR08G11030 I 0.813
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.819
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.856
Lus10025216.g Linum usitatissimum Lus10025216.g I 0.814
Lus10030517.g Linum usitatissimum Lus10030517.g I 0.813
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.816
MTR_8g005750 Medicago truncatula MTR_8g005750 I 0.819
MTR_7g073380 Medicago truncatula MTR_7g073380 I 0.812
MTR_2g075700 Medicago truncatula MTR_2g075700 I 0.811
MTR_2g075680 Medicago truncatula MTR_2g075680 I 0.811
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.819
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.816
OBART12G00850 Oryza barthii OBART12G00850 N 0.825
OBART05G20340 Oryza barthii OBART05G20340 I 0.818
OBART12G00820 Oryza barthii OBART12G00820 N 0.809
OBART11G01110 Oryza barthii OBART11G01110 I 0.831
OBART11G01090 Oryza barthii OBART11G01090 N 0.809
OBART05G20330 Oryza barthii OBART05G20330 I 0.812
OBART05G08130 Oryza barthii OBART05G08130 I 0.858
OB05G27830 Oryza brachyantha OB05G27830 I 0.815
OB05G17240 Oryza brachyantha OB05G17240 I 0.857
OB12G11030 Oryza brachyantha OB12G11030 N 0.824
OB01G44140 Oryza brachyantha OB01G44140 I 0.809
OB05G27850 Oryza brachyantha OB05G27850 I 0.810
OB11G10740 Oryza brachyantha OB11G10740 N 0.812
OB11G10760 Oryza brachyantha OB11G10760 N 0.824
OB12G11010 Oryza brachyantha OB12G11010 N 0.809
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.817
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I 0.858
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.809
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I 0.831
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.812
ORGLA12G0007300 Oryza glaberrima ORGLA12G0007300 N 0.809
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N 0.825
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N 0.808
ORGLA11G0201700 Oryza glaberrima ORGLA11G0201700 N 0.809
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.812
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.817
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I 0.831
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.817
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I 0.858
OGLUM12G01270 Oryza glumaepatula OGLUM12G01270 N 0.809
BGIOSGA036759 Oryza indica BGIOSGA036759 N 0.809
BGIOSGA017556 Oryza indica BGIOSGA017556 I 0.858
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.819
BGIOSGA030535 Oryza indica BGIOSGA030535 I 0.813
BGIOSGA034612 Oryza indica BGIOSGA034612 I 0.831
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.809
BGIOSGA034615 Oryza indica BGIOSGA034615 N 0.809
BGIOSGA036756 Oryza indica BGIOSGA036756 N 0.825
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.817
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.817
OLONG_019907 Oryza longistaminata OLONG_019907 I 0.858
OMERI11G01570 Oryza meridionalis OMERI11G01570 N 0.825
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.818
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.819
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.817
OMERI01G32490 Oryza meridionalis OMERI01G32490 I 0.808
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.808
ONIVA11G01030 Oryza nivara ONIVA11G01030 N 0.809
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.817
ONIVA05G08650 Oryza nivara ONIVA05G08650 I 0.858
ONIVA11G01240 Oryza nivara ONIVA11G01240 I 0.831
ONIVA09G05410 Oryza nivara ONIVA09G05410 I 0.813
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.809
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.819
OPUNC11G00980 Oryza punctata OPUNC11G00980 N 0.821
OPUNC01G34270 Oryza punctata OPUNC01G34270 N 0.808
OPUNC12G00960 Oryza punctata OPUNC12G00960 N 0.809
OPUNC12G00990 Oryza punctata OPUNC12G00990 N 0.821
OPUNC05G07410 Oryza punctata OPUNC05G07410 I 0.858
OPUNC11G00940 Oryza punctata OPUNC11G00940 N 0.809
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.811
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.818
ORUFI11G01040 Oryza rufipogon ORUFI11G01040 N 0.809
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.817
ORUFI09G06720 Oryza rufipogon ORUFI09G06720 I 0.812
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.819
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I 0.858
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.809
ORUFI12G01160 Oryza rufipogon ORUFI12G01160 N 0.809
OS01G0820700 Oryza sativa OS01G0820700 I 0.809
OS12G0116700 Oryza sativa OS12G0116700 N 0.825
OS12G0116400 Oryza sativa OS12G0116400 N 0.809
OS11G0116900 Oryza sativa OS11G0116900 N 0.809
OS09G0334500 Oryza sativa OS09G0334500 I 0.812
OS11G0117500 Oryza sativa OS11G0117500 N 0.825
OS05G0478800 Oryza sativa OS05G0478800 I 0.819
OS05G0478400 Oryza sativa OS05G0478400 I 0.817
Pavir.Bb02088 Panicum virgatum Pavir.Bb02088 I 0.810
Pavir.Ca00084 Panicum virgatum Pavir.Ca00084 N 0.828
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.820
Pavir.Ga01476 Panicum virgatum Pavir.Ga01476 N 0.809
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.821
Pavir.Ba02545 Panicum virgatum Pavir.Ba02545 I 0.810
Pavir.J34713 Panicum virgatum Pavir.J34713 N 0.825
Pavir.J09582 Panicum virgatum Pavir.J09582 N 0.823
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.821
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I 0.811
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I 0.814
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I 0.812
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I 0.812
Si010764m.g Setaria italica Si010764m.g N 0.822
Si011007m.g Setaria italica Si011007m.g N 0.809
Si019098m.g Setaria italica Si019098m.g N 0.815
Si025181m.g Setaria italica Si025181m.g I 0.878
Si026831m.g Setaria italica Si026831m.g N 0.809
Si027876m.g Setaria italica Si027876m.g N 0.828
Si028202m.g Setaria italica Si028202m.g I 0.808
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I 0.830
Sb02g022290 Sorghum bicolor Sb02g022290 I 0.812
Sb05g001220 Sorghum bicolor Sb05g001220 N 0.833
Sb08g002560 Sorghum bicolor Sb08g002560 N 0.824
Sb08g002590 Sorghum bicolor Sb08g002590 N 0.808
TCM_006103 Theobroma cacao TCM_006103 I 0.817
TCM_019689 Theobroma cacao TCM_019689 I 0.833
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.809
Traes_5AL_69A969FF4 Triticum aestivum Traes_5AL_69A969FF4 N 0.831
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.809
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I 0.808
TRIUR3_01447 Triticum urartu TRIUR3_01447 N 0.828
TRIUR3_14306 Triticum urartu TRIUR3_14306 I 0.834
TRIUR3_01445 Triticum urartu TRIUR3_01445 N 0.828
TRIUR3_16097 Triticum urartu TRIUR3_16097 N 0.822
TRIUR3_20905 Triticum urartu TRIUR3_20905 N 0.816
TRIUR3_22128 Triticum urartu TRIUR3_22128 I 0.808
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.831
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.828
VIT_13s0067g03140 Vitis vinifera VIT_13s0067g03140 I 0.816
GRMZM2G004060 Zea mays GRMZM2G004060 I 0.815
GRMZM2G163418 Zea mays GRMZM2G163418 I 0.808
GRMZM2G400559 Zea mays GRMZM2G400559 N 0.825
GRMZM2G441031 Zea mays GRMZM2G441031 I 0.811
GRMZM2G169564 Zea mays GRMZM2G169564 N 0.824