CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ca02643
(
Panicum virgatum
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Pavir.Ca02643
T356709_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY30
M02563_2.00
Arabidopsis thaliana
RGTCAACNNN
NNNGTTGACY
PBM
Weirauch et al.(2014)
pTH7611
0.830
0.661
WRKY30
M07422_2.00
Arabidopsis thaliana
DAAGTCAACGN
NCGTTGACTTH
Dap-seq
OMalley et al.(2016)
WRKY30_col_a
0.830
0.661
WRKY30
M07423_2.00
Arabidopsis thaliana
NNAAGTCAACGNH
DNCGTTGACTTNN
Dap-seq
OMalley et al.(2016)
WRKY30_colamp_a
0.830
0.661
WRKY53
M01090_2.00
Arabidopsis thaliana
RGTCAACNN
NNGTTGACY
PBM
Sullivan et al.(2014)
pTH8245
0.828
0.661
WRKY55
M07392_2.00
Arabidopsis thaliana
HWAGTCAACGNH
DNCGTTGACTWD
Dap-seq
OMalley et al.(2016)
WRKY55_col_a
0.818
0.593
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ca02643.3.p
WRKY
383
443
DDGSSWRKYGQKNVLGAKFPRSYYRCTYHRTMGCLAVKSVQRTDEDPMLFDVVYQGTHTCV
Pavir.Ca02643.4.p
WRKY
390
450
DDGSSWRKYGQKNVLGAKFPRSYYRCTYHRTMGCLAVKSVQRTDEDPMLFDVVYQGTHTCV
Pavir.Ca02643.5.p
WRKY
390
450
DDGSSWRKYGQKNVLGAKFPRSYYRCTYHRTMGCLAVKSVQRTDEDPMLFDVVYQGTHTCV
Links
Other
WRKY
family TFs
Other
Panicum virgatum
TFs
342 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy