CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ea03257
(
Panicum virgatum
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Pavir.Ea03257
T356737_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY21
M02553_2.00
Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN
PBM
Weirauch et al.(2014)
pTH7422
0.810
0.467
WRKY21
M07389_2.00
Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a
0.810
0.467
WRKY21
M07390_2.00
Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_col
0.810
0.467
WRKY63
M02546_2.00
Arabidopsis thaliana
NGGTCAAN
NTTGACCN
PBM
Weirauch et al.(2014)
pTH8182
0.809
0.483
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ea03257.1.p
WRKY
131
192
YDGYQWRKYGQKRITNTRYPRCYYRCSFHRERGCRATKQVQQCSGGDQPQYLVLYFNDHTCD
Links
Other
WRKY
family TFs
Other
Panicum virgatum
TFs
187 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Eb03562
Panicum virgatum
Pavir.Eb03562
I
0.902
Si002121m.g
Setaria italica
Si002121m.g
I
0.893
Sb03g038200
Sorghum bicolor
Sb03g038200
N
0.882
GRMZM2G158328
Zea mays
GRMZM2G158328
I
0.875
MLOC_3853
Hordeum vulgare
MLOC_3853
N
0.846
Pavir.J33941
Panicum virgatum
Pavir.J33941
N
0.840
F775_23296
Aegilops tauschii
F775_23296
N
0.839
BRADI2G53510
Brachypodium distachyon
BRADI2G53510
I
0.832
Si036565m.g
Setaria italica
Si036565m.g
I
0.829
LPERR01G30490
Leersia perrieri
LPERR01G30490
I
0.827
Pavir.Eb03559
Panicum virgatum
Pavir.Eb03559
I
0.826
Si004791m.g
Setaria italica
Si004791m.g
I
0.826
Pavir.J31756
Panicum virgatum
Pavir.J31756
I
0.826
SELMODRAFT_113487
Selaginella moellendorffii
SELMODRAFT_113487
I
0.821
GRMZM2G030272
Zea mays
GRMZM2G030272
N
0.821
SELMODRAFT_29692
Selaginella moellendorffii
SELMODRAFT_29692
I
0.821
OPUNC05G17980
Oryza punctata
OPUNC05G17980
I
0.821
Sb01g036180
Sorghum bicolor
Sb01g036180
I
0.820
Sb03g038170
Sorghum bicolor
Sb03g038170
I
0.820
orange1.1g018407m.g
Citrus sinensis
orange1.1g018407m.g
I
0.819
GRMZM2G382350
Zea mays
GRMZM2G382350
I
0.819
BRADI1G63220
Brachypodium distachyon
BRADI1G63220
I
0.819
Ciclev10033384m.g
Citrus clementina
Ciclev10033384m.g
I
0.819
GRMZM2G029292
Zea mays
GRMZM2G029292
I
0.818
ONIVA05G21440
Oryza nivara
ONIVA05G21440
I
0.818
OGLUM05G21470
Oryza glumaepatula
OGLUM05G21470
I
0.818
GSMUA_Achr7G22020_001
Musa acuminata
GSMUA_Achr7G22020_001
I
0.818
ORUFI05G21560
Oryza rufipogon
ORUFI05G21560
I
0.818
BGIOSGA030346
Oryza indica
BGIOSGA030346
I
0.818
OGLUM05G21420
Oryza glumaepatula
OGLUM05G21420
I
0.818
OS05G0478400
Oryza sativa
OS05G0478400
I
0.818
OMERI05G18170
Oryza meridionalis
OMERI05G18170
I
0.818
ORGLA05G0177200
Oryza glaberrima
ORGLA05G0177200
I
0.818
OPUNC05G18030
Oryza punctata
OPUNC05G18030
I
0.817
F775_22808
Aegilops tauschii
F775_22808
I
0.817
28455.m000362
Ricinus communis
28455.m000362
I
0.817
cassava33373.m1
Manihot esculenta
cassava33373.m1
I
0.817
Bostr.26959s0259
Boechera stricta
Bostr.26959s0259
I
0.817
TCM_016012
Theobroma cacao
TCM_016012
I
0.817
Pm023533
Prunus mume
Pm023533
I
0.816
Pavir.Ib01500
Panicum virgatum
Pavir.Ib01500
N
0.816
Si039519m.g
Setaria italica
Si039519m.g
N
0.816
Sb01g036870
Sorghum bicolor
Sb01g036870
N
0.816
PRUPE_ppa023256mg
Prunus persica
PRUPE_ppa023256mg
I
0.816
ORGLA05G0177400
Oryza glaberrima
ORGLA05G0177400
I
0.816
OBART05G20330
Oryza barthii
OBART05G20330
I
0.816
OMERI05G18260
Oryza meridionalis
OMERI05G18260
I
0.815
OGLUM01G39380
Oryza glumaepatula
OGLUM01G39380
N
0.815
OBART05G20340
Oryza barthii
OBART05G20340
I
0.815
Sb02g011050
Sorghum bicolor
Sb02g011050
I
0.815
cassava43475.valid.m1
Manihot esculenta
cassava43475.valid.m1
I
0.815
ORUFI01G38680
Oryza rufipogon
ORUFI01G38680
N
0.815
ORGLA01G0292000
Oryza glaberrima
ORGLA01G0292000
N
0.815
OPUNC05G18000
Oryza punctata
OPUNC05G18000
I
0.815
ONIVA01G40380
Oryza nivara
ONIVA01G40380
N
0.815
OPUNC01G34290
Oryza punctata
OPUNC01G34290
N
0.815
OB05G27850
Oryza brachyantha
OB05G27850
I
0.815
BGIOSGA000583
Oryza indica
BGIOSGA000583
N
0.815
BRADI2G22230
Brachypodium distachyon
BRADI2G22230
I
0.814
MLOC_11088
Hordeum vulgare
MLOC_11088
N
0.814
OGLUM05G21510
Oryza glumaepatula
OGLUM05G21510
I
0.814
GSMUA_Achr8G25110_001
Musa acuminata
GSMUA_Achr8G25110_001
I
0.814
PDK_20s1314561g002
Phoenix dactylifera
PDK_20s1314561g002
I
0.814
MLOC_15430
Hordeum vulgare
MLOC_15430
I
0.814
OMERI01G32500
Oryza meridionalis
OMERI01G32500
N
0.813
BGIOSGA012571
Oryza indica
BGIOSGA012571
I
0.813
OMERI03G14670
Oryza meridionalis
OMERI03G14670
I
0.813
OLONG_027124
Oryza longistaminata
OLONG_027124
I
0.813
ONIVA03G17390
Oryza nivara
ONIVA03G17390
I
0.813
PGSC0003DMG400020608
Solanum tuberosum
PGSC0003DMG400020608
I
0.813
F775_43334
Aegilops tauschii
F775_43334
I
0.813
OS03G0335200
Oryza sativa
OS03G0335200
I
0.813
Lus10042538.g
Linum usitatissimum
Lus10042538.g
I
0.813
ORUFI03G16960
Oryza rufipogon
ORUFI03G16960
I
0.813
OLONG_024544
Oryza longistaminata
OLONG_024544
I
0.813
OBART03G16400
Oryza barthii
OBART03G16400
I
0.813
TRIUR3_22128
Triticum urartu
TRIUR3_22128
I
0.813
OB03G26140
Oryza brachyantha
OB03G26140
I
0.813
TRIUR3_20905
Triticum urartu
TRIUR3_20905
N
0.813
OGLUM03G16780
Oryza glumaepatula
OGLUM03G16780
I
0.813
Lus10021999.g
Linum usitatissimum
Lus10021999.g
I
0.813
Traes_5BL_8688F70C9
Triticum aestivum
Traes_5BL_8688F70C9
I
0.813
Carubv10022120m.g
Capsella rubella
Carubv10022120m.g
I
0.812
LPERR05G16150
Leersia perrieri
LPERR05G16150
I
0.812
OPUNC01G34280
Oryza punctata
OPUNC01G34280
I
0.812
F775_07845
Aegilops tauschii
F775_07845
I
0.812
F775_04954
Aegilops tauschii
F775_04954
N
0.812
MTR_7g073380
Medicago truncatula
MTR_7g073380
I
0.812
TRIUR3_16097
Triticum urartu
TRIUR3_16097
N
0.812
OGLUM05G21440
Oryza glumaepatula
OGLUM05G21440
I
0.812
BGIOSGA004704
Oryza indica
BGIOSGA004704
I
0.811
LPERR03G14340
Leersia perrieri
LPERR03G14340
I
0.811
LPERR01G30500
Leersia perrieri
LPERR01G30500
I
0.811
OS05G0478800
Oryza sativa
OS05G0478800
I
0.811
OS01G0820400
Oryza sativa
OS01G0820400
N
0.811
Traes_1AL_309623B48
Triticum aestivum
Traes_1AL_309623B48
N
0.811
Traes_1DL_DFE1721E0
Triticum aestivum
Traes_1DL_DFE1721E0
N
0.811
TRIUR3_22129
Triticum urartu
TRIUR3_22129
N
0.811
gene16584-v1.0-hybrid
Fragaria vesca
gene16584-v1.0-hybrid
I
0.811
BGIOSGA017860
Oryza indica
BGIOSGA017860
I
0.811
Traes_1BL_46340D685
Triticum aestivum
Traes_1BL_46340D685
N
0.811
Solyc03g095770.2
Solanum lycopersicum
Solyc03g095770.2
I
0.811
GLYMA01G43420
Glycine max
GLYMA01G43420
I
0.811
Sb08g002590
Sorghum bicolor
Sb08g002590
N
0.811
F775_02926
Aegilops tauschii
F775_02926
N
0.811
OB11G10740
Oryza brachyantha
OB11G10740
N
0.811
ORUFI05G21600
Oryza rufipogon
ORUFI05G21600
I
0.811
ONIVA01G40370
Oryza nivara
ONIVA01G40370
I
0.811
OPUNC01G34260
Oryza punctata
OPUNC01G34260
N
0.811
MLOC_57051
Hordeum vulgare
MLOC_57051
I
0.811
OMERI05G18250
Oryza meridionalis
OMERI05G18250
I
0.811
OGLUM01G39350
Oryza glumaepatula
OGLUM01G39350
N
0.811
OLONG_000628
Oryza longistaminata
OLONG_000628
N
0.811
OMERI01G32440
Oryza meridionalis
OMERI01G32440
N
0.811
OB01G44150
Oryza brachyantha
OB01G44150
I
0.811
ORGLA01G0291600
Oryza glaberrima
ORGLA01G0291600
N
0.811
ONIVA05G21460
Oryza nivara
ONIVA05G21460
I
0.811
ORUFI01G38670
Oryza rufipogon
ORUFI01G38670
I
0.811
OBART01G35350
Oryza barthii
OBART01G35350
I
0.811
ORUFI01G38630
Oryza rufipogon
ORUFI01G38630
N
0.811
BGIOSGA004701
Oryza indica
BGIOSGA004701
N
0.811
OBART01G35280
Oryza barthii
OBART01G35280
N
0.811
ORGLA01G0291900
Oryza glaberrima
ORGLA01G0291900
I
0.811
TRIUR3_27575
Triticum urartu
TRIUR3_27575
I
0.810
Thhalv10016853m.g
Eutrema salsugineum
Thhalv10016853m.g
I
0.810
OGLUM05G02170
Oryza glumaepatula
OGLUM05G02170
I
0.810
Carubv10023424m.g
Capsella rubella
Carubv10023424m.g
I
0.810
Gorai.004G247000
Gossypium raimondii
Gorai.004G247000
I
0.810
Gorai.007G122300
Gossypium raimondii
Gorai.007G122300
I
0.810
Cagra.0567s0023
Capsella grandiflora
Cagra.0567s0023
I
0.810
Traes_3B_8B0D448D8
Triticum aestivum
Traes_3B_8B0D448D8
I
0.810
Bostr.20129s0455
Boechera stricta
Bostr.20129s0455
I
0.810
Bostr.24513s0175
Boechera stricta
Bostr.24513s0175
I
0.810
BGIOSGA019117
Oryza indica
BGIOSGA019117
I
0.810
OBART05G02110
Oryza barthii
OBART05G02110
I
0.810
Bo3g024750
Brassica oleracea
Bo3g024750
I
0.810
Bostr.26959s0262
Boechera stricta
Bostr.26959s0262
I
0.810
Bo4g173290
Brassica oleracea
Bo4g173290
I
0.810
Bo4g056260
Brassica oleracea
Bo4g056260
I
0.810
Bra018303
Brassica rapa
Bra018303
I
0.810
Bra021652
Brassica rapa
Bra021652
I
0.810
MLOC_6114
Hordeum vulgare
MLOC_6114
I
0.810
SapurV1A.1571s0090
Salix purpurea
SapurV1A.1571s0090
I
0.810
WRKY21
Arabidopsis thaliana
AT2G30590
D
0.810
F775_22564
Aegilops tauschii
F775_22564
I
0.810
MLOC_22356
Hordeum vulgare
MLOC_22356
I
0.810
ORUFI05G02200
Oryza rufipogon
ORUFI05G02200
I
0.810
LPERR05G16170
Leersia perrieri
LPERR05G16170
I
0.810
MTR_2g075610
Medicago truncatula
MTR_2g075610
I
0.810
WRKY21
Arabidopsis lyrata
scaffold_401549.1
I
0.810
Bra022808
Brassica rapa
Bra022808
I
0.810
LPERR05G01920
Leersia perrieri
LPERR05G01920
I
0.810
MTR_2g075750
Medicago truncatula
MTR_2g075750
I
0.810
OMERI05G02210
Oryza meridionalis
OMERI05G02210
I
0.810
MDP0000234335
Malus domestica
MDP0000234335
I
0.810
Si024816m.g
Setaria italica
Si024816m.g
I
0.809
Carubv10021899m.g
Capsella rubella
Carubv10021899m.g
I
0.809
Eucgr.G03145
Eucalyptus grandis
Eucgr.G03145
I
0.809
Eucgr.B01503
Eucalyptus grandis
Eucgr.B01503
I
0.809
TRIUR3_33054
Triticum urartu
TRIUR3_33054
I
0.809
OB01G44130
Oryza brachyantha
OB01G44130
I
0.809
WRKY63
Arabidopsis thaliana
AT1G66600
D
0.809
Gorai.004G199500
Gossypium raimondii
Gorai.004G199500
I
0.809
Pavir.Ia00625
Panicum virgatum
Pavir.Ia00625
I
0.808
Pavir.J08083
Panicum virgatum
Pavir.J08083
I
0.808
BGIOSGA013535
Oryza indica
BGIOSGA013535
I
0.808
Pavir.J41073
Panicum virgatum
Pavir.J41073
I
0.808
GRMZM2G018487
Zea mays
GRMZM2G018487
I
0.808
ONIVA10G03010
Oryza nivara
ONIVA10G03010
I
0.808
OPUNC03G30830
Oryza punctata
OPUNC03G30830
I
0.808
ORGLA03G0303900
Oryza glaberrima
ORGLA03G0303900
I
0.808
MLOC_76441
Hordeum vulgare
MLOC_76441
I
0.808
OMERI03G31020
Oryza meridionalis
OMERI03G31020
I
0.808
OBART03G33630
Oryza barthii
OBART03G33630
I
0.808
OGLUM03G33290
Oryza glumaepatula
OGLUM03G33290
I
0.808
OLONG_003947
Oryza longistaminata
OLONG_003947
I
0.808
ORUFI03G35010
Oryza rufipogon
ORUFI03G35010
I
0.808
LPERR03G28150
Leersia perrieri
LPERR03G28150
I
0.808
Traes_5BL_AEF9FE805
Triticum aestivum
Traes_5BL_AEF9FE805
I
0.808
Traes_5DL_A54ED44C9
Triticum aestivum
Traes_5DL_A54ED44C9
I
0.808
cassava7524.valid.m1
Manihot esculenta
cassava7524.valid.m1
I
0.808
Traes_5AL_A3653B781
Triticum aestivum
Traes_5AL_A3653B781
I
0.808
BRADI1G09170
Brachypodium distachyon
BRADI1G09170
I
0.808
OS03G0741400
Oryza sativa
OS03G0741400
I
0.808
Sb01g008550
Sorghum bicolor
Sb01g008550
I
0.808
Si036039m.g
Setaria italica
Si036039m.g
I
0.808
cassava7525.valid.m1
Manihot esculenta
cassava7525.valid.m1
I
0.808