Pavir.Eb02454 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Eb02454 T356751_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK25870.1
M01325_2.00
Cannabis sativa
NRGTCAAM

KTTGACYN
PBM
Lambert et al.(2019)
pTH10156
0.837 0.776
WRKY50
M07424_2.00
Arabidopsis thaliana
NNAAAAGTCAAMN

NKTTGACTTTTNN
Dap-seq
OMalley et al.(2016)
WRKY50_col_a
0.831 0.776
WRKY50
M07425_2.00
Arabidopsis thaliana
NWAAGTCAANN

NNTTGACTTWN
Dap-seq
OMalley et al.(2016)
WRKY50_colamp_a
0.831 0.776
WRKY51
M02568_2.00
Arabidopsis thaliana
NNRGTCAANN

NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7478
0.821 0.741
WRKY48
M02565_2.00
Arabidopsis thaliana
NNVGTCADNN

NNHTGACBNN
PBM
Weirauch et al.(2014)
pTH7552
0.819 0.707
WRKY28
M07406_2.00
Arabidopsis thaliana
HAAAGTCAAMNNH

DNNKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY28_col_a
0.818 0.690
WRKY28
M07407_2.00
Arabidopsis thaliana
VAAAGTCAAMG

CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY28_colamp_a
0.818 0.690
WRKY71
M07374_2.00
Arabidopsis thaliana
HAAAGTCAAMN

NKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY71_col_a
0.818 0.690
WRKY8
M02564_2.00
Arabidopsis thaliana
NRGTCAAHN

NDTTGACYN
PBM
Weirauch et al.(2014)
pTH7554
0.818 0.672
WRKY8
M07428_2.00
Arabidopsis thaliana
NAAAAGTCAACRNHW

WDNYGTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY8_colamp_a
0.818 0.672
WRKY8
M07429_2.00
Arabidopsis thaliana
NNVAAAGTCAACRNH

DNYGTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY8_col
0.818 0.672
WRKY12
M00898_2.00
Arabidopsis thaliana
NHGGTCAACNN

NNGTTGACCDN
PBM
Franco-Zorrilla et al.(2014)
WRKY12
0.813 0.672
fgenesh1_pg.C_Chr_11.0001000193
M02570_2.00
Ostreococcus tauri
NRGTCARNN

NNYTGACYN
PBM
Weirauch et al.(2014)
pTH9432
0.813 0.534
WRKY75
M02562_2.00
Arabidopsis thaliana
NRGTCAAM

KTTGACYN
PBM
Weirauch et al.(2014)
pTH8821
0.812 0.638
WRKY75
M07420_2.00
Arabidopsis thaliana
NAAAGTCAACGNH

DNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY75_col_a
0.812 0.638
WRKY75
M07421_2.00
Arabidopsis thaliana
VAAAGTCAACRNH

DNYGTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY75_colamp_a
0.812 0.638
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN

NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.810 0.638
WRKY24
M07426_2.00
Arabidopsis thaliana
NNNAWAGTCAACGN

NCGTTGACTWTNNN
Dap-seq
OMalley et al.(2016)
WRKY24_col_a
0.810 0.621
WRKY24
M07427_2.00
Arabidopsis thaliana
NAWAGTCAACGNH

DNCGTTGACTWTN
Dap-seq
OMalley et al.(2016)
WRKY24_colamp_a
0.810 0.621
WRKY57
M02547_2.00
Arabidopsis thaliana
NNRGTCAAHN

NDTTGACYNN
PBM
Weirauch et al.(2014)
pTH7917
0.810 0.672
WRKY43
M02555_2.00
Arabidopsis thaliana
NRGTCAAHNN

NNDTTGACYN
PBM
Weirauch et al.(2014)
pTH7373
0.809 0.621
WRKY43
M07393_2.00
Arabidopsis thaliana
NNAAAGTCAACGNN

NNCGTTGACTTTNN
Dap-seq
OMalley et al.(2016)
WRKY43_col_a
0.809 0.621
WRKY43
M07394_2.00
Arabidopsis thaliana
NNNNAAAGTCAACGN

NCGTTGACTTTNNNN
Dap-seq
OMalley et al.(2016)
WRKY43_colamp_a
0.809 0.621
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb02454.1.p WRKY 142 199

Links

Other WRKY family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

1052 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action