Pavir.Gb01477 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Gb01477 T356780_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY26
M07418_2.00
Arabidopsis thaliana
MWAAGTCAACGNH

DNCGTTGACTWWK
Dap-seq
OMalley et al.(2016)
WRKY26_col_a
0.862 0.791
WRKY26
M07419_2.00
Arabidopsis thaliana
HMWAGTCAAMR

YKTTGACTWKD
Dap-seq
OMalley et al.(2016)
WRKY26_colamp_a
0.862 0.791
WRKY2
M02567_2.00
Arabidopsis thaliana
BRGTCAAM

KTTGACYV
PBM
Weirauch et al.(2014)
pTH8832
0.862 0.887
Q40090_IPOBA
M11466_2.00
Ipomoea batatas Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPF1_Q2
0.861 0.826
WRKY20
M07414_2.00
Arabidopsis thaliana
HHHRGTCAAMGNH

DNCKTTGACYDDD
Dap-seq
OMalley et al.(2016)
WRKY20_col_a
0.860 0.809
WRKY3
M07381_2.00
Arabidopsis thaliana
MAWAGTCAAMR

YKTTGACTWTK
Dap-seq
OMalley et al.(2016)
WRKY3_col_a
0.858 0.783
WRKY33
M02554_2.00
Arabidopsis thaliana
NNRGTCHDNN

NNHDGACYNN
PBM
Weirauch et al.(2014)
pTH8183
0.858 0.843
WRKY33
M07391_2.00
Arabidopsis thaliana
HWWAGTCAAMD

HKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY33_col_a
0.858 0.843
PK05432.1
M01324_2.00
Cannabis sativa
NNRGTCARH

DYTGACYNN
PBM
Lambert et al.(2019)
pTH11342
0.848 0.791
WRKY25
M02552_2.00
Arabidopsis thaliana
YRGTCAAM

KTTGACYR
PBM
Weirauch et al.(2014)
pTH8810
0.847 0.713
WRKY25
M07387_2.00
Arabidopsis thaliana
HWWRGTCAAMR

YKTTGACYWWD
Dap-seq
OMalley et al.(2016)
WRKY25_col_a
0.847 0.713
WRKY25
M07388_2.00
Arabidopsis thaliana
NNNHWRGTCAACRNH

DNYGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY25_colamp_a
0.847 0.713
ZAP1
M02726_2.00
Arabidopsis thaliana
DRCKCGGTCAA

TTGACCGMGYH
SELEX
Mathelier et al.(2014)
MA0589.1
0.836 0.670
ZAP1
M11463_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_01
0.836 0.670
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01477.1.p WRKY 140 196
Pavir.Gb01477.1.p WRKY 352 409

Links

Other WRKY family TFs
Other Panicum virgatum TFs

786 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000002164 Ailuropoda melanoleuca ENSAMEG00000002164 I 0.000
ENSAMEG00000006449 Ailuropoda melanoleuca ENSAMEG00000006449 I 0.000
ENSAMXG00000014210 Astyanax mexicanus ENSAMXG00000014210 I 0.000
ENSAMXG00000024858 Astyanax mexicanus ENSAMXG00000024858 I 0.000
ENSAMXG00000025568 Astyanax mexicanus ENSAMXG00000025568 I 0.000
ENSAPLG00000001445 Anas platyrhynchos ENSAPLG00000001445 I 0.000
ASCL1 Bos taurus ENSBTAG00000016227 I 0.000
ASCL2 Bos taurus ENSBTAG00000026769 I 0.000
ENSBTAP00000021592-D1 Bos grunniens ENSBTAP00000021592-D1 I 0.000
ASCL1 Canis familiaris ENSCAFG00000007324 I 0.000
ASCL2 Canis familiaris ENSCAFG00000010103 I 0.000
ASCL2 Callithrix jacchus ENSCJAG00000011549 I 0.000
ASCL1 Callithrix jacchus ENSCJAG00000014345 I 0.000
ASCL1 Cavia porcellus ENSCPOG00000020666 I 0.000
ENSCPOG00000023523 Cavia porcellus ENSCPOG00000023523 I 0.000
ENSCSAG00000018938 Chlorocebus sabaeus ENSCSAG00000018938 I 0.000
ENSCSAG00000018956 Chlorocebus sabaeus ENSCSAG00000018956 I 0.000
ascl1a Danio rerio ENSDARG00000038386 I 0.000
ascl1b Danio rerio ENSDARG00000101628 I 0.000
ASCL1 Dasypus novemcinctus ENSDNOG00000001616 I 0.000
ENSFALG00000014466 Ficedula albicollis ENSFALG00000014466 I 0.000
ASCL1 Felis catus ENSFCAG00000008250 I 0.000
ASCL2 Felis catus ENSFCAG00000018914 I 0.000
ASCL2 Homo sapiens ENSG00000183734 D 0.000
ascl1b Gasterosteus aculeatus ENSGACG00000011375 I 0.000
ascl1a Gasterosteus aculeatus ENSGACG00000020048 I 0.000
ENSGALG00000023607 Gallus gallus ENSGALG00000023607 I 0.000
ASCL1 Gorilla gorilla ENSGGOG00000005479 I 0.000
ASCL2 Gorilla gorilla ENSGGOG00000007421 I 0.000
ENSGMOG00000002268 Gadus morhua ENSGMOG00000002268 I 0.000
ENSGMOG00000009589 Gadus morhua ENSGMOG00000009589 I 0.000
ENSLACG00000001911 Latimeria chalumnae ENSLACG00000001911 I 0.000
ENSLACG00000010712 Latimeria chalumnae ENSLACG00000010712 I 0.000
ASCL2 Loxodonta africana ENSLAFG00000020947 I 0.000
ENSLOCG00000017318 Lepisosteus oculatus ENSLOCG00000017318 I 0.000
ENSMEUG00000010370 Macropus eugenii ENSMEUG00000010370 I 0.000
ASCL2 Macaca mulatta ENSMMUG00000001322 I 0.000
ASCL1 Macaca mulatta ENSMMUG00000005747 I 0.000
ASCL1 Monodelphis domestica ENSMODG00000002347 I 0.000
ENSMPUG00000019849 Mustela putorius furo ENSMPUG00000019849 I 0.000
Ascl2 Mus musculus ENSMUSG00000009248 D 0.000
Ascl1 Mus musculus ENSMUSG00000020052 D 0.000
ENSNLEG00000002663 Nomascus leucogenys ENSNLEG00000002663 I 0.000
ENSNLEG00000006410 Nomascus leucogenys ENSNLEG00000006410 I 0.000
ASCL1 Ornithorhynchus anatinus ENSOANG00000013973 I 0.000
ENSOARG00000015879 Ovis aries ENSOARG00000015879 I 0.000
ASCL1 Oryctolagus cuniculus ENSOCUG00000006992 I 0.000
ASCL1 Otolemur garnettii ENSOGAG00000030324 I 0.000
ASCL2 Otolemur garnettii ENSOGAG00000034847 I 0.000
ENSONIG00000020440 Oreochromis niloticus ENSONIG00000020440 I 0.000
ENSONIG00000021219 Oreochromis niloticus ENSONIG00000021219 I 0.000
ASCL2 Ochotona princeps ENSOPRG00000019165 I 0.000
ascl1b Oryzias latipes ENSORLG00000012117 I 0.000
ascl1a Oryzias latipes ENSORLG00000016504 I 0.000
ENSP00000266744 Macaca fascicularis ENSP00000266744 I 0.000
ENSPANG00000019205 Papio anubis ENSPANG00000019205 I 0.000
ASCL2 Procavia capensis ENSPCAG00000000676 I 0.000
ENSPFOG00000018073 Poecilia formosa ENSPFOG00000018073 I 0.000
ENSPFOG00000020633 Poecilia formosa ENSPFOG00000020633 I 0.000
ENSPPYG00000002926 Pongo abelii ENSPPYG00000002926 I 0.000
ENSPPYG00000004884 Pongo abelii ENSPPYG00000004884 I 0.000
ASCL2 Pan troglodytes ENSPTRG00000003174 I 0.000
ASCL2 Pteropus vampyrus ENSPVAG00000002964 I 0.000
ASCL1 Pteropus vampyrus ENSPVAG00000011272 I 0.000
Ascl1 Rattus norvegicus ENSRNOG00000004294 I 0.000
Ascl2 Rattus norvegicus ENSRNOG00000020434 I 0.000
ENSSHAG00000011936 Sarcophilus harrisii ENSSHAG00000011936 I 0.000
ENSSTOG00000028167 Ictidomys tridecemlineatus ENSSTOG00000028167 I 0.000
ENSSTOG00000028420 Ictidomys tridecemlineatus ENSSTOG00000028420 I 0.000
ASCL2 Taeniopygia guttata ENSTGUG00000009283 I 0.000
ascl1b Tetraodon nigroviridis ENSTNIG00000011380 I 0.000
ascl1b Takifugu rubripes ENSTRUG00000011651 I 0.000
ascl1a Takifugu rubripes ENSTRUG00000012801 I 0.000
ASCL1 Tursiops truncatus ENSTTRG00000016243 I 0.000
ASCL1 Vicugna pacos ENSVPAG00000002018 I 0.000
ENSXMAG00000019614 Xiphophorus maculatus ENSXMAG00000019614 I 0.000
ENSXMAG00000019890 Xiphophorus maculatus ENSXMAG00000019890 I 0.000
e_gw.302.11.1 Branchiostoma floridae e_gw.302.11.1 I 0.000
e_gw.59.47.1 Branchiostoma floridae e_gw.59.47.1 I 0.000
Ogr07565 Ophisaurus gracilis Ogr07565 I 0.000
Pvit_15764 Pogona vitticeps Pvit_15764 I 0.000
Sakowv30008499m.g Saccoglossus kowalevskii Sakowv30008499m.g I 0.000
SMAR011494 Strigamia maritima SMAR011494 I 0.000
SPU_028148 Strongylocentrotus purpuratus SPU_028148 I 0.000
ascl1 Xenopus tropicalis XB-GENE-1032967 I 0.000
ascl1.L Xenopus laevis XB-GENE-1032969 I 0.000
ascl1.S Xenopus laevis XB-GENE-17340658 I 0.000