Pavir.Gb01477 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Gb01477 T356780_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY26
M07418_2.00
Arabidopsis thaliana
MWAAGTCAACGNH

DNCGTTGACTWWK
Dap-seq
OMalley et al.(2016)
WRKY26_col_a
0.862 0.791
WRKY26
M07419_2.00
Arabidopsis thaliana
HMWAGTCAAMR

YKTTGACTWKD
Dap-seq
OMalley et al.(2016)
WRKY26_colamp_a
0.862 0.791
WRKY2
M02567_2.00
Arabidopsis thaliana
BRGTCAAM

KTTGACYV
PBM
Weirauch et al.(2014)
pTH8832
0.862 0.887
Q40090_IPOBA
M11466_2.00
Ipomoea batatas Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPF1_Q2
0.861 0.826
WRKY20
M07414_2.00
Arabidopsis thaliana
HHHRGTCAAMGNH

DNCKTTGACYDDD
Dap-seq
OMalley et al.(2016)
WRKY20_col_a
0.860 0.809
WRKY3
M07381_2.00
Arabidopsis thaliana
MAWAGTCAAMR

YKTTGACTWTK
Dap-seq
OMalley et al.(2016)
WRKY3_col_a
0.858 0.783
WRKY33
M02554_2.00
Arabidopsis thaliana
NNRGTCHDNN

NNHDGACYNN
PBM
Weirauch et al.(2014)
pTH8183
0.858 0.843
WRKY33
M07391_2.00
Arabidopsis thaliana
HWWAGTCAAMD

HKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY33_col_a
0.858 0.843
PK05432.1
M01324_2.00
Cannabis sativa
NNRGTCARH

DYTGACYNN
PBM
Lambert et al.(2019)
pTH11342
0.848 0.791
WRKY25
M02552_2.00
Arabidopsis thaliana
YRGTCAAM

KTTGACYR
PBM
Weirauch et al.(2014)
pTH8810
0.847 0.713
WRKY25
M07387_2.00
Arabidopsis thaliana
HWWRGTCAAMR

YKTTGACYWWD
Dap-seq
OMalley et al.(2016)
WRKY25_col_a
0.847 0.713
WRKY25
M07388_2.00
Arabidopsis thaliana
NNNHWRGTCAACRNH

DNYGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY25_colamp_a
0.847 0.713
ZAP1
M02726_2.00
Arabidopsis thaliana
DRCKCGGTCAA

TTGACCGMGYH
SELEX
Mathelier et al.(2014)
MA0589.1
0.836 0.670
ZAP1
M11463_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_01
0.836 0.670
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01477.1.p WRKY 140 196
Pavir.Gb01477.1.p WRKY 352 409

Links

Other WRKY family TFs
Other Panicum virgatum TFs

786 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACRE_069340 Acremonium chrysogenum ACRE_069340 I 0.000
Bcin12g02150 Botrytis cinerea Bcin12g02150 I 0.000
CFIO01_00502 Colletotrichum fioriniae CFIO01_00502 I 0.000
CGGC5_12972 Colletotrichum gloeosporioides CGGC5_12972 I 0.000
CH063_04960 Colletotrichum higginsianum CH063_04960 I 0.000
clr-2 Neurospora crassa NCU08042 D 0.000
CSUB01_07131 Colletotrichum sublineola CSUB01_07131 I 0.000
CTHT_0033840 Chaetomium thermophilum CTHT_0033840 I 0.000
e_gw1.3.2553.1 Cryphonectria parasitica e_gw1.3.2553.1 I 0.000
F503_04469 Ophiostoma piceae uamh F503_04469 I 0.000
fgenesh3_pm.C_scaffold_3000122 Neurospora discreta fgenesh3_pm.C_scaffold_3000122 I 0.000
GGTG_08810 Gaeumannomyces graminis GGTG_08810 I 0.000
GLRG_08292 Colletotrichum graminicola GLRG_08292 I 0.000
HMPREF1624_07333 Sporothrix schenckii HMPREF1624_07333 I 0.000
MAPG_04988 Magnaporthe poae MAPG_04988 I 0.000
MGG_01833 Magnaporthe oryzae MGG_01833 I 0.000
NEUTE1DRAFT_99711 Neurospora tetrasperma NEUTE1DRAFT_99711 I 0.000
PFICI_05693 Pestalotiopsis fici PFICI_05693 I 0.000
PODANS_6_1990 Podospora anserina PODANS_6_1990 I 0.000
S40285_05006 Stachybotrys chlorohalonata S40285_05006 I 0.000
S40288_04438 Stachybotrys chartarum S40288_04438 I 0.000
SBOR_4253 Sclerotinia borealis SBOR_4253 I 0.000
SMAC_03793 Sordaria macrospora SMAC_03793 I 0.000
THITE_2128774 Thielavia terrestris THITE_2128774 I 0.000
VDAG_00390 Verticillium dahliae VDAG_00390 I 0.000