CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Gb01556
(
Panicum virgatum
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Pavir.Gb01556
T356781_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY63
M02546_2.00
Arabidopsis thaliana
NGGTCAAN
NTTGACCN
PBM
Weirauch et al.(2014)
pTH8182
0.813
0.456
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Gb01556.1.p
WRKY
43
99
HGHLWRKYGQKVIKDAPHPRCSYREDRHCQASKLVQQVTHDFPPLFEVTYMYEHTCS
Links
Other
WRKY
family TFs
Other
Panicum virgatum
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
WRKY63
Arabidopsis thaliana
AT1G66600
D
0.813
PK03324.1
Cannabis sativa
PK03324.1
I
0.814
Bostr.26959s0259
Boechera stricta
Bostr.26959s0259
I
0.823
mgf009193m
Mimulus guttatus
mgf009193m
I
0.809
mgf002542m
Mimulus guttatus
mgf002542m
I
0.812
Cucsa.177060
Cucumis sativus
Cucsa.177060
I
0.810
cassava36286.valid.m1
Manihot esculenta
cassava36286.valid.m1
I
0.820
cassava25180.valid.m1
Manihot esculenta
cassava25180.valid.m1
I
0.809
Pm003015
Prunus mume
Pm003015
I
0.814
Pm003013
Prunus mume
Pm003013
I
0.820
Cla018337
Citrullus lanatus
Cla018337
I
0.811
VIT_08s0058g01390
Vitis vinifera
VIT_08s0058g01390
I
0.812
Traes_3DL_48F7A19D2
Triticum aestivum
Traes_3DL_48F7A19D2
I
0.812
TRAES3BF081400030CFD_g
Triticum aestivum
TRAES3BF081400030CFD_g
I
0.824
Traes_3AL_2297D6E18
Triticum aestivum
Traes_3AL_2297D6E18
I
0.811
TCM_019689
Theobroma cacao
TCM_019689
I
0.829
Bostr.26959s0261
Boechera stricta
Bostr.26959s0261
I
0.823
Bostr.26959s0262
Boechera stricta
Bostr.26959s0262
I
0.828
Thhalv10000686m.g
Eutrema salsugineum
Thhalv10000686m.g
I
0.809
SapurV1A.0914s0120
Salix purpurea
SapurV1A.0914s0120
I
0.809
SapurV1A.0356s0010
Salix purpurea
SapurV1A.0356s0010
I
0.809
Pavir.J31756
Panicum virgatum
Pavir.J31756
I
0.808
Pavir.Eb03559
Panicum virgatum
Pavir.Eb03559
I
0.808
orange1.1g020291m.g
Citrus sinensis
orange1.1g020291m.g
I
0.810
MDP0000175240
Malus domestica
MDP0000175240
I
0.816
Ciclev10012055m.g
Citrus clementina
Ciclev10012055m.g
I
0.810
Carubv10022120m.g
Capsella rubella
Carubv10022120m.g
I
0.813
Carubv10021860m.g
Capsella rubella
Carubv10021860m.g
I
0.820
Carubv10021420m.g
Capsella rubella
Carubv10021420m.g
I
0.814
Carubv10012720m.g
Capsella rubella
Carubv10012720m.g
I
0.810
Cagra.15225s0001
Capsella grandiflora
Cagra.15225s0001
I
0.814
Cagra.0255s0014
Capsella grandiflora
Cagra.0255s0014
I
0.810
Si012735m.g
Setaria italica
Si012735m.g
I
0.850
AC205562.3_FG002
Zea mays
AC205562.3_FG002
I
0.808
GRMZM2G382350
Zea mays
GRMZM2G382350
I
0.811
GRMZM2G065290
Zea mays
GRMZM2G065290
I
0.818
WRKY67
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000969
I
0.825
F775_23182
Aegilops tauschii
F775_23182
I
0.812
BRADI2G53495
Brachypodium distachyon
BRADI2G53495
I
0.812
BRADI1G63220
Brachypodium distachyon
BRADI1G63220
I
0.815
Bra008459
Brassica rapa
Bra008459
I
0.809
Bo2g095820
Brassica oleracea
Bo2g095820
I
0.809
BGIOSGA004703
Oryza indica
BGIOSGA004703
I
0.811
WRKY66
Arabidopsis thaliana
AT1G80590
I
0.813
WRKY64
Arabidopsis thaliana
AT1G66560
I
0.814
WRKY67
Arabidopsis thaliana
AT1G66550
I
0.818
Al_scaffold_0002_1233
Arabidopsis lyrata
Al_scaffold_0002_1233
I
0.814
GSMUA_Achr7G22020_001
Musa acuminata
GSMUA_Achr7G22020_001
I
0.810
OB01G44140
Oryza brachyantha
OB01G44140
I
0.812
OMERI01G32480
Oryza meridionalis
OMERI01G32480
I
0.827
Si004791m.g
Setaria italica
Si004791m.g
I
0.811
Sb07g019400
Sorghum bicolor
Sb07g019400
I
0.809
Sb03g038180
Sorghum bicolor
Sb03g038180
I
0.816
PRUPE_ppa026704mg
Prunus persica
PRUPE_ppa026704mg
I
0.820
PRUPE_ppa025912mg
Prunus persica
PRUPE_ppa025912mg
I
0.808
POPTR_0016s14490
Populus trichocarpa
POPTR_0016s14490
I
0.812
POPTR_0006s10950
Populus trichocarpa
POPTR_0006s10950
I
0.809
PGSC0003DMG400027582
Solanum tuberosum
PGSC0003DMG400027582
I
0.814
OS01G0820700
Oryza sativa
OS01G0820700
I
0.811
ONIVA01G40340
Oryza nivara
ONIVA01G40340
I
0.811
ORUFI01G38660
Oryza rufipogon
ORUFI01G38660
I
0.811
ORGLA01G0291800
Oryza glaberrima
ORGLA01G0291800
I
0.811
OPUNC01G34270
Oryza punctata
OPUNC01G34270
N
0.827
Pavir.J38024
Panicum virgatum
Pavir.J38024
N
0.816
Pavir.J37617
Panicum virgatum
Pavir.J37617
N
0.816
Pavir.Ga01476
Panicum virgatum
Pavir.Ga01476
N
0.843
BRADI4G44370
Brachypodium distachyon
BRADI4G44370
N
0.811
Si005138m.g
Setaria italica
Si005138m.g
N
0.816