Pavir.Gb01556 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Gb01556 T356781_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY63
M02546_2.00
Arabidopsis thaliana
NGGTCAAN

NTTGACCN
PBM
Weirauch et al.(2014)
pTH8182
0.813 0.456
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01556.1.p WRKY 43 99

Links

Other WRKY family TFs
Other Panicum virgatum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_23182 Aegilops tauschii F775_23182 I 0.812
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.825
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.814
WRKY66 Arabidopsis thaliana AT1G80590 I 0.813
WRKY63 Arabidopsis thaliana AT1G66600 D 0.813
WRKY64 Arabidopsis thaliana AT1G66560 I 0.814
WRKY67 Arabidopsis thaliana AT1G66550 I 0.818
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.828
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.823
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.823
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.812
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.815
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.811
Bo2g095820 Brassica oleracea Bo2g095820 I 0.809
Bra008459 Brassica rapa Bra008459 I 0.809
PK03324.1 Cannabis sativa PK03324.1 I 0.814
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.814
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.810
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.813
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.820
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.814
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.810
Cla018337 Citrullus lanatus Cla018337 I 0.811
Ciclev10012055m.g Citrus clementina Ciclev10012055m.g I 0.810
orange1.1g020291m.g Citrus sinensis orange1.1g020291m.g I 0.810
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.810
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.809
MDP0000175240 Malus domestica MDP0000175240 I 0.816
cassava25180.valid.m1 Manihot esculenta cassava25180.valid.m1 I 0.809
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.820
mgf002542m Mimulus guttatus mgf002542m I 0.812
mgf009193m Mimulus guttatus mgf009193m I 0.809
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.810
OB01G44140 Oryza brachyantha OB01G44140 I 0.812
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.811
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.811
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.827
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.811
OPUNC01G34270 Oryza punctata OPUNC01G34270 N 0.827
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.811
OS01G0820700 Oryza sativa OS01G0820700 I 0.811
Pavir.Ga01476 Panicum virgatum Pavir.Ga01476 N 0.843
Pavir.J31756 Panicum virgatum Pavir.J31756 I 0.808
Pavir.J37617 Panicum virgatum Pavir.J37617 N 0.816
Pavir.J38024 Panicum virgatum Pavir.J38024 N 0.816
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I 0.808
POPTR_0006s10950 Populus trichocarpa POPTR_0006s10950 I 0.809
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I 0.812
Pm003013 Prunus mume Pm003013 I 0.820
Pm003015 Prunus mume Pm003015 I 0.814
PRUPE_ppa025912mg Prunus persica PRUPE_ppa025912mg I 0.808
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I 0.820
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I 0.809
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I 0.809
Si005138m.g Setaria italica Si005138m.g N 0.816
Si012735m.g Setaria italica Si012735m.g I 0.850
Si004791m.g Setaria italica Si004791m.g I 0.811
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I 0.814
Sb03g038180 Sorghum bicolor Sb03g038180 I 0.816
Sb07g019400 Sorghum bicolor Sb07g019400 I 0.809
TCM_019689 Theobroma cacao TCM_019689 I 0.829
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I 0.824
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.812
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.811
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.812
AC205562.3_FG002 Zea mays AC205562.3_FG002 I 0.808
GRMZM2G065290 Zea mays GRMZM2G065290 I 0.818
GRMZM2G382350 Zea mays GRMZM2G382350 I 0.811