CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10000331m.g
(
Eutrema salsugineum
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Thhalv10000331m.g
T356991_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY59
M07382_2.00
Arabidopsis thaliana
NDWWAGTCAAMN
NKTTGACTWWHN
Dap-seq
OMalley et al.(2016)
WRKY59_col_a
0.861
0.810
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.816
0.517
WRKY50
M07424_2.00
Arabidopsis thaliana
NNAAAAGTCAAMN
NKTTGACTTTTNN
Dap-seq
OMalley et al.(2016)
WRKY50_col_a
0.816
0.621
WRKY50
M07425_2.00
Arabidopsis thaliana
NWAAGTCAANN
NNTTGACTTWN
Dap-seq
OMalley et al.(2016)
WRKY50_colamp_a
0.816
0.621
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10000331m
WRKY
106
163
DDGYKWRKYGKKTIRGSPHPRHYHKCSNPGCIVKKKIDIDTSNPEYVLTTYEGRHNHP
Links
Other
WRKY
family TFs
Other
Eutrema salsugineum
TFs
189 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy