chr2.CM0058.50.nc (Lotus japonicus)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 chr2.CM0058.50.nc T357115_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q40090_IPOBA
M11466_2.00
Ipomoea batatas Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPF1_Q2
0.877 0.939
WRKY33
M02554_2.00
Arabidopsis thaliana
NNRGTCHDNN

NNHDGACYNN
PBM
Weirauch et al.(2014)
pTH8183
0.877 0.930
WRKY33
M07391_2.00
Arabidopsis thaliana
HWWAGTCAAMD

HKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY33_col_a
0.877 0.930
WRKY26
M07418_2.00
Arabidopsis thaliana
MWAAGTCAACGNH

DNCGTTGACTWWK
Dap-seq
OMalley et al.(2016)
WRKY26_col_a
0.873 0.852
WRKY26
M07419_2.00
Arabidopsis thaliana
HMWAGTCAAMR

YKTTGACTWKD
Dap-seq
OMalley et al.(2016)
WRKY26_colamp_a
0.873 0.852
WRKY20
M07414_2.00
Arabidopsis thaliana
HHHRGTCAAMGNH

DNCKTTGACYDDD
Dap-seq
OMalley et al.(2016)
WRKY20_col_a
0.865 0.852
WRKY3
M07381_2.00
Arabidopsis thaliana
MAWAGTCAAMR

YKTTGACTWTK
Dap-seq
OMalley et al.(2016)
WRKY3_col_a
0.864 0.843
WRKY2
M02567_2.00
Arabidopsis thaliana
BRGTCAAM

KTTGACYV
PBM
Weirauch et al.(2014)
pTH8832
0.861 0.861
WRKY25
M02552_2.00
Arabidopsis thaliana
YRGTCAAM

KTTGACYR
PBM
Weirauch et al.(2014)
pTH8810
0.861 0.765
WRKY25
M07387_2.00
Arabidopsis thaliana
HWWRGTCAAMR

YKTTGACYWWD
Dap-seq
OMalley et al.(2016)
WRKY25_col_a
0.861 0.765
WRKY25
M07388_2.00
Arabidopsis thaliana
NNNHWRGTCAACRNH

DNYGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY25_colamp_a
0.861 0.765
PK05432.1
M01324_2.00
Cannabis sativa
NNRGTCARH

DYTGACYNN
PBM
Lambert et al.(2019)
pTH11342
0.860 0.861
ZAP1
M02726_2.00
Arabidopsis thaliana
DRCKCGGTCAA

TTGACCGMGYH
SELEX
Mathelier et al.(2014)
MA0589.1
0.838 0.696
ZAP1
M11463_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_01
0.838 0.696
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0058.50.nc WRKY 232 288
chr2.CM0058.50.nc WRKY 404 461

Links

Other WRKY family TFs
Other Lotus japonicus TFs

802 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ASU_04514 Ascaris suum ASU_04514 N 0.000
Bm5645 Brugia malayi Bm5645 N 0.000
EEL_0000011501 Elaeophora elaphi EEL_0000011501 N 0.000
LOAG_17012 Loa loa LOAG_17012 N 0.000
nAv.1.0.1.g03251 Acanthocheilonema viteae nAv.1.0.1.g03251 N 0.000
nDi.2.2.2.g01481 Dirofilaria immitis nDi.2.2.2.g01481 N 0.000
nLs.2.1.2.g06094 Litomosoides sigmodontis nLs.2.1.2.g06094 N 0.000
nOo.2.0.1.g08920 Onchocerca ochengi nOo.2.0.1.g08920 N 0.000
OFLC_0001450001 Onchocerca flexuosa OFLC_0001450001 N 0.000
TCNE_0000242701 Toxocara canis TCNE_0000242701 N 0.000
WBGene00245638 Onchocerca volvulus WBGene00245638 N 0.000
WUBG_00011 Wuchereria bancrofti WUBG_00011 N 0.000