CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chr4.CM0227.580.nc
(
Lotus japonicus
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
chr4.CM0227.580.nc
T357123_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY2
M02567_2.00
Arabidopsis thaliana
BRGTCAAM
KTTGACYV
PBM
Weirauch et al.(2014)
pTH8832
0.817
0.626
WRKY3
M07381_2.00
Arabidopsis thaliana
MAWAGTCAAMR
YKTTGACTWTK
Dap-seq
OMalley et al.(2016)
WRKY3_col_a
0.812
0.643
ZAP1
M02726_2.00
Arabidopsis thaliana
DRCKCGGTCAA
TTGACCGMGYH
SELEX
Mathelier et al.(2014)
MA0589.1
0.812
0.513
ZAP1
M11463_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_01
0.812
0.513
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr4.CM0227.580.nc
WRKY
35
91
GNNCSWKKYGYKLVKGFLFTRYYYKCTHQDCPAKRNVLHSLDGNLTEVSYKGNHNHQ
chr4.CM0227.580.nc
WRKY
177
234
DDGYKWRKCGLKDIKGNPNPRSYYKCTAPDCVVRKQVERSPTDLRVVITTYEGMHNHD
Links
Other
WRKY
family TFs
Other
Lotus japonicus
TFs
117 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy