CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_069579.1
(
Lotus japonicus
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
LjSGA_069579.1
T357159_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.820
0.603
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN
NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.810
0.569
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.810
0.569
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.810
0.569
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.810
0.569
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_069579.1
WRKY
46
103
DDGFKWLKYGQKVRKGNPNPRSYYKCANPGCIVRKLVERDSTDQRVVVTIYEGKHNHD
Links
Other
WRKY
family TFs
Other
Lotus japonicus
TFs
168 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G052671
Zea mays
GRMZM2G052671
I
0.848
orange1.1g011483m.g
Citrus sinensis
orange1.1g011483m.g
I
0.848
Pavir.Bb02418
Panicum virgatum
Pavir.Bb02418
I
0.842
GRMZM2G151407
Zea mays
GRMZM2G151407
I
0.842
Pavir.J40119
Panicum virgatum
Pavir.J40119
I
0.842
Sb02g027950
Sorghum bicolor
Sb02g027950
I
0.842
Si029342m.g
Setaria italica
Si029342m.g
I
0.842
ONIVA04G13890
Oryza nivara
ONIVA04G13890
I
0.842
GRMZM2G449681
Zea mays
GRMZM2G449681
I
0.840
evm.TU.supercontig_12.196
Carica papaya
evm.TU.supercontig_12.196
I
0.837
MLOC_67851
Hordeum vulgare
MLOC_67851
I
0.836
chr2.CM0641.70.nc
Lotus japonicus
chr2.CM0641.70.nc
I
0.836
GLYMA06G37100
Glycine max
GLYMA06G37100
I
0.836
Lus10026409.g
Linum usitatissimum
Lus10026409.g
I
0.835
Ca_13524
Cicer arietinum
Ca_13524
I
0.832
OGLUM09G14860
Oryza glumaepatula
OGLUM09G14860
I
0.831
OLONG_005396
Oryza longistaminata
OLONG_005396
I
0.831
OBART09G14210
Oryza barthii
OBART09G14210
I
0.831
ORUFI09G15250
Oryza rufipogon
ORUFI09G15250
I
0.831
OB04G23060
Oryza brachyantha
OB04G23060
I
0.831
MLOC_58019
Hordeum vulgare
MLOC_58019
I
0.831
OS09G0481700
Oryza sativa
OS09G0481700
I
0.831
BGIOSGA029574
Oryza indica
BGIOSGA029574
I
0.831
OMERI09G11000
Oryza meridionalis
OMERI09G11000
I
0.831
OPUNC09G12700
Oryza punctata
OPUNC09G12700
I
0.831
ORGLA09G0109100
Oryza glaberrima
ORGLA09G0109100
I
0.831
ONIVA09G14780
Oryza nivara
ONIVA09G14780
I
0.831
Pavir.J13787
Panicum virgatum
Pavir.J13787
I
0.828
Si031470m.g
Setaria italica
Si031470m.g
I
0.826
GLYMA17G24700
Glycine max
GLYMA17G24700
I
0.825
SELMODRAFT_59955
Selaginella moellendorffii
SELMODRAFT_59955
I
0.824
GLYMA10G31413
Glycine max
GLYMA10G31413
I
0.820
TRIUR3_16804
Triticum urartu
TRIUR3_16804
I
0.820
Bo6g034690
Brassica oleracea
Bo6g034690
I
0.820
Gorai.009G062400
Gossypium raimondii
Gorai.009G062400
I
0.820
Bo6g051390
Brassica oleracea
Bo6g051390
I
0.819
Bra037106
Brassica rapa
Bra037106
I
0.819
MDP0000788581
Malus domestica
MDP0000788581
I
0.819
evm.TU.supercontig_127.27
Carica papaya
evm.TU.supercontig_127.27
I
0.819
Thhalv10012199m.g
Eutrema salsugineum
Thhalv10012199m.g
I
0.819
MTR_1g077780
Medicago truncatula
MTR_1g077780
I
0.818
TCM_036912
Theobroma cacao
TCM_036912
I
0.818
GSMUA_Achr4G01930_001
Musa acuminata
GSMUA_Achr4G01930_001
I
0.818
gene15013-v1.0-hybrid
Fragaria vesca
gene15013-v1.0-hybrid
I
0.817
GSMUA_Achr2G16390_001
Musa acuminata
GSMUA_Achr2G16390_001
I
0.817
MDP0000263349
Malus domestica
MDP0000263349
I
0.817
Eucgr.C02659
Eucalyptus grandis
Eucgr.C02659
I
0.816
Eucgr.F04317
Eucalyptus grandis
Eucgr.F04317
I
0.816
WRKY10
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1004208
I
0.816
TRIUR3_10262
Triticum urartu
TRIUR3_10262
I
0.816
Bra038006
Brassica rapa
Bra038006
I
0.816
cassava18395.valid.m1
Manihot esculenta
cassava18395.valid.m1
I
0.815
Cla022703
Citrullus lanatus
Cla022703
I
0.815
TCM_035897
Theobroma cacao
TCM_035897
I
0.815
Pm005697
Prunus mume
Pm005697
I
0.814
cassava8103.valid.m1
Manihot esculenta
cassava8103.valid.m1
I
0.814
evm.TU.supercontig_10.75
Carica papaya
evm.TU.supercontig_10.75
I
0.814
MDP0000161881
Malus domestica
MDP0000161881
I
0.813
OMERI04G23060
Oryza meridionalis
OMERI04G23060
I
0.813
MDP0000228838
Malus domestica
MDP0000228838
I
0.813
Solyc04g051690.2
Solanum lycopersicum
Solyc04g051690.2
I
0.813
gw1.137.58.1
Physcomitrella patens
gw1.137.58.1
I
0.813
MDP0000263961
Malus domestica
MDP0000263961
I
0.813
Carubv10011619m.g
Capsella rubella
Carubv10011619m.g
N
0.813
Traes_5AL_E566BD64E
Triticum aestivum
Traes_5AL_E566BD64E
I
0.813
Cagra.0001s0017
Capsella grandiflora
Cagra.0001s0017
I
0.813
Sb10g025600
Sorghum bicolor
Sb10g025600
I
0.812
Cla019419
Citrullus lanatus
Cla019419
I
0.812
Cucsa.197550
Cucumis sativus
Cucsa.197550
I
0.812
EuGene.1200010296
Micromonas sp RCC299
EuGene.1200010296
I
0.812
Bostr.6758s0015
Boechera stricta
Bostr.6758s0015
I
0.812
Gorai.006G025700
Gossypium raimondii
Gorai.006G025700
I
0.812
mgf006734m
Mimulus guttatus
mgf006734m
I
0.812
Sb10g025590
Sorghum bicolor
Sb10g025590
I
0.812
GLYMA14G11960
Glycine max
GLYMA14G11960
I
0.812
GSMUA_Achr7G19340_001
Musa acuminata
GSMUA_Achr7G19340_001
I
0.812
MTR_3g106060
Medicago truncatula
MTR_3g106060
I
0.812
F775_22247
Aegilops tauschii
F775_22247
I
0.812
Traes_6DS_8F684013D
Triticum aestivum
Traes_6DS_8F684013D
I
0.811
Bo6g080740
Brassica oleracea
Bo6g080740
I
0.811
Cucsa.162810
Cucumis sativus
Cucsa.162810
I
0.811
Gorai.001G037800
Gossypium raimondii
Gorai.001G037800
I
0.811
GSMUA_Achr3G13440_001
Musa acuminata
GSMUA_Achr3G13440_001
I
0.811
POPTR_0018s02470
Populus trichocarpa
POPTR_0018s02470
I
0.811
WRKY40
Arabidopsis lyrata
fgenesh2_kg.2__2291__AT1G80840.1
I
0.810
GLYMA13G44730
Glycine max
GLYMA13G44730
I
0.810
Gorai.001G037700
Gossypium raimondii
Gorai.001G037700
I
0.810
PRUPE_ppa009939mg
Prunus persica
PRUPE_ppa009939mg
I
0.810
BRADI3G57710
Brachypodium distachyon
BRADI3G57710
I
0.810
Bra035148
Brassica rapa
Bra035148
I
0.810
GLYMA15G00570
Glycine max
GLYMA15G00570
I
0.810
Bostr.20129s0425
Boechera stricta
Bostr.20129s0425
I
0.810
GSMUA_Achr3G20290_001
Musa acuminata
GSMUA_Achr3G20290_001
I
0.810
GRMZM2G169149
Zea mays
GRMZM2G169149
I
0.810
OMERI02G32400
Oryza meridionalis
OMERI02G32400
I
0.810
Ciclev10026105m.g
Citrus clementina
Ciclev10026105m.g
I
0.810
Carubv10020726m.g
Capsella rubella
Carubv10020726m.g
I
0.810
Bra008435
Brassica rapa
Bra008435
I
0.810
Bra003588
Brassica rapa
Bra003588
I
0.810
WRKY10
Arabidopsis thaliana
AT1G55600
I
0.810
SapurV1A.0280s0370
Salix purpurea
SapurV1A.0280s0370
I
0.810
Thhalv10018925m.g
Eutrema salsugineum
Thhalv10018925m.g
I
0.810
PK08451.1
Cannabis sativa
PK08451.1
I
0.810
PDK_20s1878521g002
Phoenix dactylifera
PDK_20s1878521g002
I
0.810
ONIVA02G36110
Oryza nivara
ONIVA02G36110
I
0.810
WRKY40
Arabidopsis thaliana
AT1G80840
D
0.810
Pavir.J01311
Panicum virgatum
Pavir.J01311
I
0.810
POPTR_0001s03620
Populus trichocarpa
POPTR_0001s03620
I
0.810
Bo6g124190
Brassica oleracea
Bo6g124190
I
0.810
Bo2g095640
Brassica oleracea
Bo2g095640
I
0.810
Bo1g158770
Brassica oleracea
Bo1g158770
I
0.810
BGIOSGA009118
Oryza indica
BGIOSGA009118
I
0.810
Pavir.Aa00351
Panicum virgatum
Pavir.Aa00351
I
0.810
Cucsa.271570
Cucumis sativus
Cucsa.271570
I
0.810
Cagra.1725s0057
Capsella grandiflora
Cagra.1725s0057
I
0.810
VIT_04s0008g05760
Vitis vinifera
VIT_04s0008g05760
I
0.810
Sb04g034440
Sorghum bicolor
Sb04g034440
I
0.810
WRKY40
Vitis vinifera
VIT_09s0018g00240
I
0.810
LPERR01G05270
Leersia perrieri
LPERR01G05270
I
0.810
OS02G0770500
Oryza sativa
OS02G0770500
I
0.810
OB02G40910
Oryza brachyantha
OB02G40910
I
0.810
OBART02G34040
Oryza barthii
OBART02G34040
I
0.810
Si016791m.g
Setaria italica
Si016791m.g
I
0.810
ORGLA02G0294600
Oryza glaberrima
ORGLA02G0294600
I
0.810
OPUNC02G31440
Oryza punctata
OPUNC02G31440
I
0.810
OGLUM02G35200
Oryza glumaepatula
OGLUM02G35200
I
0.810
Solyc03g116890.2
Solanum lycopersicum
Solyc03g116890.2
I
0.810
Cla021335
Citrullus lanatus
Cla021335
I
0.810
LPERR02G27900
Leersia perrieri
LPERR02G27900
I
0.810
43951.m000016
Ricinus communis
43951.m000016
I
0.810
cassava36924.valid.m1
Manihot esculenta
cassava36924.valid.m1
I
0.810
GSMUA_Achr7G18820_001
Musa acuminata
GSMUA_Achr7G18820_001
I
0.810
ORUFI02G35580
Oryza rufipogon
ORUFI02G35580
I
0.810
GSMUA_Achr6G02330_001
Musa acuminata
GSMUA_Achr6G02330_001
I
0.810
GSMUA_Achr7G08850_001
Musa acuminata
GSMUA_Achr7G08850_001
I
0.810
PGSC0003DMG400019824
Solanum tuberosum
PGSC0003DMG400019824
I
0.809
Pavir.Ea01595
Panicum virgatum
Pavir.Ea01595
I
0.809
PK20163.1
Cannabis sativa
PK20163.1
I
0.809
Pavir.Eb02399
Panicum virgatum
Pavir.Eb02399
I
0.809
Pavir.Bb02124
Panicum virgatum
Pavir.Bb02124
I
0.809
Pavir.Bb02115
Panicum virgatum
Pavir.Bb02115
I
0.809
cassava37361.valid.m1
Manihot esculenta
cassava37361.valid.m1
I
0.809
SapurV1A.0372s0170
Salix purpurea
SapurV1A.0372s0170
I
0.809
SapurV1A.0869s0100
Salix purpurea
SapurV1A.0869s0100
I
0.809
Sb02g024760
Sorghum bicolor
Sb02g024760
I
0.809
Pavir.Ba01850
Panicum virgatum
Pavir.Ba01850
I
0.809
WRKY72
Arabidopsis thaliana
AT5G15130
I
0.809
Si030794m.g
Setaria italica
Si030794m.g
I
0.809
Si002295m.g
Setaria italica
Si002295m.g
I
0.809
Bo2g057610
Brassica oleracea
Bo2g057610
I
0.809
GRMZM2G057011
Zea mays
GRMZM2G057011
I
0.809
POPTR_0018s02480
Populus trichocarpa
POPTR_0018s02480
I
0.809
evm.TU.supercontig_127.25
Carica papaya
evm.TU.supercontig_127.25
I
0.809
GLYMA04G06495
Glycine max
GLYMA04G06495
I
0.809
Cla008481
Citrullus lanatus
Cla008481
I
0.809
GLYMA06G06530
Glycine max
GLYMA06G06530
I
0.809
GRMZM2G125653
Zea mays
GRMZM2G125653
I
0.809
WRKY72
Arabidopsis lyrata
scaffold_601540.1
I
0.809
GSMUA_Achr7G05200_001
Musa acuminata
GSMUA_Achr7G05200_001
I
0.809
TCM_018403
Theobroma cacao
TCM_018403
I
0.809
mgf010377m
Mimulus guttatus
mgf010377m
I
0.809
Traes_6AS_DA75BB1FD
Triticum aestivum
Traes_6AS_DA75BB1FD
I
0.809
MLOC_60890
Hordeum vulgare
MLOC_60890
I
0.809
Cucsa.097890
Cucumis sativus
Cucsa.097890
I
0.809
chr5.CM0040.670.nd
Lotus japonicus
chr5.CM0040.670.nd
I
0.808
Sb03g026280
Sorghum bicolor
Sb03g026280
I
0.808
GSMUA_Achr5G09730_001
Musa acuminata
GSMUA_Achr5G09730_001
I
0.808
MTR_1g013760
Medicago truncatula
MTR_1g013760
I
0.808