CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PDK_20s1787361g001
(
Phoenix dactylifera
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
PDK_20s1787361g001
T357228_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY3
M07381_2.00
Arabidopsis thaliana
MAWAGTCAAMR
YKTTGACTWTK
Dap-seq
OMalley et al.(2016)
WRKY3_col_a
0.832
0.872
WRKY2
M02567_2.00
Arabidopsis thaliana
BRGTCAAM
KTTGACYV
PBM
Weirauch et al.(2014)
pTH8832
0.825
0.833
PK05432.1
M01324_2.00
Cannabis sativa
NNRGTCARH
DYTGACYNN
PBM
Lambert et al.(2019)
pTH11342
0.824
0.846
WRKY20
M07414_2.00
Arabidopsis thaliana
HHHRGTCAAMGNH
DNCKTTGACYDDD
Dap-seq
OMalley et al.(2016)
WRKY20_col_a
0.823
0.821
Q40090_IPOBA
M11466_2.00
Ipomoea batatas
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPF1_Q2
0.822
0.859
WRKY26
M07418_2.00
Arabidopsis thaliana
MWAAGTCAACGNH
DNCGTTGACTWWK
Dap-seq
OMalley et al.(2016)
WRKY26_col_a
0.817
0.795
WRKY26
M07419_2.00
Arabidopsis thaliana
HMWAGTCAAMR
YKTTGACTWKD
Dap-seq
OMalley et al.(2016)
WRKY26_colamp_a
0.817
0.795
WRKY33
M02554_2.00
Arabidopsis thaliana
NNRGTCHDNN
NNHDGACYNN
PBM
Weirauch et al.(2014)
pTH8183
0.817
0.821
WRKY33
M07391_2.00
Arabidopsis thaliana
HWWAGTCAAMD
HKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY33_col_a
0.817
0.821
ZAP1
M02726_2.00
Arabidopsis thaliana
DRCKCGGTCAA
TTGACCGMGYH
SELEX
Mathelier et al.(2014)
MA0589.1
0.810
0.667
ZAP1
M11463_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_01
0.810
0.667
WRKY25
M02552_2.00
Arabidopsis thaliana
YRGTCAAM
KTTGACYR
PBM
Weirauch et al.(2014)
pTH8810
0.808
0.718
WRKY25
M07387_2.00
Arabidopsis thaliana
HWWRGTCAAMR
YKTTGACYWWD
Dap-seq
OMalley et al.(2016)
WRKY25_col_a
0.808
0.718
WRKY25
M07388_2.00
Arabidopsis thaliana
NNNHWRGTCAACRNH
DNYGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY25_colamp_a
0.808
0.718
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1787361g001
WRKY
95
151
DDGYNWRKYGQKMVKGSEYPRSYYRCTHPNCPVKKKVEHSLDGQITGIIYKGQHNHQ
PDK_20s1787361g001
WRKY
276
296
DDGYRWRKYGQKVVKGNPHPR
Links
Other
WRKY
family TFs
Other
Phoenix dactylifera
TFs
667 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy