SKUD_205008 (Saccharomyces kudriavzevii)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 SKUD_205008 T383900_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YRM1
M00106_2.00 		Saccharomyces cerevisiae
RCGGADAT
ATHTCCGY		 PBM
Badis et al.(2008)
YRM1_2064 		0.612 0.795
YRM1
M01595_2.00 		Saccharomyces cerevisiae
NNCGGAAATANNN
NNNTATTTCCGNN		 PBM
Zhu et al.(2009)
Yrm1 		0.612 0.795
YRM1
M07533_2.00 		Saccharomyces cerevisiae
VCGGARAT
ATYTCCGB		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0438.1 		0.612 0.795
YRM1
M08692_2.00 		Saccharomyces cerevisiae
SDNNNRCGGRWAWWVNDNNKW
WMNNHNBWWTWYCCGYNNNHS		 Misc
DeBoer et al.(2011)
YOR172W_813 		0.612 0.795
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EJT43772 Zinc cluster 29 68

Links

Other Zinc cluster family TFs
Other Saccharomyces kudriavzevii TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
YRM1 Saccharomyces cerevisiae YOR172W D 0.612
20955_YOR172W Saccharomyces paradoxus 20955_YOR172W I 0.579
TDEL_0A02690 Torulaspora delbrueckii TDEL_0A02690 I 0.579
KAFR_0G02540 Kazachstania africana KAFR_0G02540 I 0.541