SKUD_205412 (Saccharomyces kudriavzevii)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 SKUD_205412 T383902_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STB4
M00100_2.00 		Saccharomyces cerevisiae
NWCGGRWNNN
NNNWYCCGWN		 PBM
Badis et al.(2008)
STB4_2129 		0.658 0.921
STB4
M00927_2.00 		Saccharomyces cerevisiae
NTTCSGAKMN
NKMTCSGAAN		 PBM
Gordan et al.(2011)
Stb4 		0.658 0.921
STB4
M07527_2.00 		Saccharomyces cerevisiae
YTCGGAA
TTCCGAR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0391.1 		0.658 0.921
STB4
M08686_2.00 		Saccharomyces cerevisiae
YTCGGAA
TTCCGAR		 Misc
DeBoer et al.(2011)
YMR019W_483 		0.658 0.921
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EJT43719 Zinc cluster 44 82

Links

Other Zinc cluster family TFs
Other Saccharomyces kudriavzevii TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
STB4 Saccharomyces cerevisiae YMR019W D 0.658
17664_YMR019W Saccharomyces bayanus 17664_YMR019W I 0.635
17249_YMR019W Saccharomyces paradoxus 17249_YMR019W I 0.635
16481_YMR019W Saccharomyces mikatae 16481_YMR019W I 0.618
SU7_2505 Saccharomyces arboricola SU7_2505 I 0.602