SKUD_900401 (Saccharomyces kudriavzevii)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 SKUD_900401 T383904_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GAL4
M01599_2.00
Saccharomyces cerevisiae
NYCGGVN

NBCCGRN
PBM
Zhu et al.(2009)
Gal4
0.646 0.897
GAL4
M07559_2.00
Saccharomyces cerevisiae
GGANVRCW

WGYBNTCC
ChIP-exo
Rhee et al.(2011)
Gal4_1
0.646 0.897
GAL4
M07560_2.00
Saccharomyces cerevisiae
GGRAAARGGTC

GACCYTTTYCC
ChIP-exo
Rhee et al.(2011)
Gal4_2
0.646 0.897
GAL4
M07561_2.00
Saccharomyces cerevisiae
AGAACAA

TTGTTCT
ChIP-exo
Rhee et al.(2011)
Gal4_3
0.646 0.897
GAL4
M08698_2.00
Saccharomyces cerevisiae
CGGVSNNVTNYNSNCCG

CGGNSNRNABNNSBCCG
Misc
DeBoer et al.(2011)
YPL248C_1510
0.646 0.897
GAL4
M11487_2.00
Saccharomyces cerevisiae
BYWCGGWSVAVWGHBVBCCGDDV

BHHCGGVBVDCWBTBSWCCGWRV
Transfac
Matys et al.(2006)
F$GAL4_01
0.646 0.897
GAL4
M11488_2.00
Saccharomyces cerevisiae
HKYWCGGHVVRVWGHBNBCCGD

HCGGVNVDCWBYBBDCCGWRMD
Transfac
Matys et al.(2006)
F$GAL4_C
0.646 0.897
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EJT41239 Zinc cluster 9 47

Links

Other Zinc cluster family TFs
Other Saccharomyces kudriavzevii TFs

Invalid Input OrderBy

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action