CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SU7_3433
(
Saccharomyces arboricola
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
SU7_3433
T384590_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RDR1
M00108_2.00
Saccharomyces cerevisiae
DCGGRWN
NWYCCGH
PBM
Badis et al.(2008)
RDR1_2112
0.566
0.784
RDR1
M01597_2.00
Saccharomyces cerevisiae
NCGGRWNN
NNWYCCGN
PBM
Zhu et al.(2009)
Rdr1
0.566
0.784
RDR1
M07535_2.00
Saccharomyces cerevisiae
WGCGGAAN
NTTCCGCW
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0360.1
0.566
0.784
RDR1
M08694_2.00
Saccharomyces cerevisiae
WTCCGCGGAR
YTCCGCGGAW
Misc
DeBoer et al.(2011)
YOR380W_756
0.566
0.784
RDR1
M08695_2.00
Saccharomyces cerevisiae
NNNNNNNNGCGGAWANNNNNB
VNNNNNTWTCCGCNNNNNNNN
Misc
DeBoer et al.(2011)
YOR380W_843
0.566
0.784
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EJS41555
Zinc cluster
18
54
KACVPCRERKRKCNGKSPCEMCVAYGYGCHYSDDDGL
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces arboricola
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy