CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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UME6
(
Saccharomyces cerevisiae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
YDR207C
T388339_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
UME6
M00081_2.00
Saccharomyces cerevisiae
NDHCDHGDHN
NDHCDHGDHN
PBM
Badis et al.(2008)
UME6_2040
(Direct)
(Direct)
UME6
M01575_2.00
Saccharomyces cerevisiae
VGCGSNWNN
NNWNSCGCB
PBM
Zhu et al.(2009)
Ume6
(Direct)
(Direct)
UME6
M08468_2.00
Saccharomyces cerevisiae
TSGGCGGCTAWWT
AWWTAGCCGCCSA
COMPILED
Mathelier et al.(2014)
MA0412.1
(Direct)
(Direct)
UME6
M08653_2.00
Saccharomyces cerevisiae
NSGCGGYWV
BWRCCGCSN
Misc
DeBoer et al.(2011)
YDR207C_511
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.537
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00081_2.00
Zinc cluster
51
88
TGCWICRLRKKKCTEERPHCFNCERLKLDCHYDAFKPD
M01575_2.00
Zinc cluster
769
806
TGCWICRLRKKKCTEERPHCFNCERLKLDCHYDAFKPD
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YDR207C
Zinc cluster
769
806
TGCWICRLRKKKCTEERPHCFNCERLKLDCHYDAFKPD
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces cerevisiae
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
4509_YDR207C
Saccharomyces paradoxus
4509_YDR207C
I
0.683
4144_YDR207C
Saccharomyces mikatae
4144_YDR207C
I
0.683
SU7_2610
Saccharomyces arboricola
SU7_2610
I
0.683
4486_YDR207C
Saccharomyces bayanus
4486_YDR207C
I
0.676
CAGL0F05357g
Candida glabrata
CAGL0F05357g
I
0.613
ZYRO0C04686g
Zygosaccharomyces rouxii
ZYRO0C04686g
I
0.602
ZBAI_01674
Zygosaccharomyces bailii
ZBAI_01674
I
0.602
KLTH0F08074g
Lachancea thermotolerans
KLTH0F08074g
I
0.601
KLTH0F08074g
Kluyveromyces thermotolerans
KLTH0F08074g
I
0.601
Kwal_3178
Kluyveromyces waltii
Kwal_3178
I
0.601
TDEL_0F05400
Torulaspora delbrueckii
TDEL_0F05400
I
0.596
NDAI_0C04790
Naumovozyma dairenensis
NDAI_0C04790
I
0.581
AGOS_AGL099C
Ashbya gossypii
AGOS_AGL099C
I
0.565
Ecym_4153
Eremothecium cymbalariae
Ecym_4153
I
0.565
AACERI_AaceriAGL099C
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriAGL099C
I
0.565
SAKL0H13266g
Lachancea kluyveri
SAKL0H13266g
I
0.561
TBLA_0H00720
Tetrapisispora blattae
TBLA_0H00720
I
0.557
KLLA0_F20680g
Kluyveromyces lactis
KLLA0_F20680g
I
0.553