RSC3 (Saccharomyces cerevisiae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 YDR303C T388341_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables sequence-specific DNA binding activity. Involved in nucleosome organization; regulation of cellular macromolecule biosynthetic process; and transcription elongation from RNA polymerase II promoter. Located in nucleus. Part of RSC-type complex. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RSC3
M00082_2.00		 Saccharomyces cerevisiae
GCGCGCGG
CCGCGCGC		 PBM
Badis et al.(2008)
RSC3_2035		 (Direct) (Direct)
RSC3
M01576_2.00		 Saccharomyces cerevisiae
NNNNNSCGNN
NNCGSNNNNN		 PBM
Zhu et al.(2009)
Rsc3		 (Direct) (Direct)
RSC3
M07509_2.00		 Saccharomyces cerevisiae
NNVCGCG
CGCGBNN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0374.1		 (Direct) (Direct)
RSC3
M08655_2.00		 Saccharomyces cerevisiae
NNVCGCG
CGCGBNN		 Misc
DeBoer et al.(2011)
YDR303C_580		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RSC30
M00086_2.00 		Saccharomyces cerevisiae
NGCGCGCGSN
NSCGCGCGCN		 PBM
Badis et al.(2008)
RSC30_2087 		0.537 0.795
RSC30
M01580_2.00 		Saccharomyces cerevisiae
NNDCGSVNN
NNBSCGHNN		 PBM
Zhu et al.(2009)
Rsc30 		0.537 0.795
RSC30
M07513_2.00 		Saccharomyces cerevisiae
VSCGCGCS
SGCGCGSB		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0375.1 		0.537 0.795
RSC30
M08663_2.00 		Saccharomyces cerevisiae
HNHVHCSCGCGCGSGNDVSVN
NBSBHNCSCGCGCGSGDBDND		 Misc
DeBoer et al.(2011)
YHR056C_857 		0.537 0.795
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00082_2.00 Zinc cluster 11 50
M01576_2.00 Zinc cluster 12 51

DNA Binding Domains

Protein ID Domain From To Sequence
YDR303C Zinc cluster 12 51

Links

Other Zinc cluster family TFs
Other Saccharomyces cerevisiae TFs

Invalid Input OrderBy

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action