RSC30 (Saccharomyces cerevisiae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 YHR056C T388349_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RSC30
M00086_2.00
Saccharomyces cerevisiae
NGCGCGCGSN

NSCGCGCGCN
PBM
Badis et al.(2008)
RSC30_2087
(Direct) (Direct)
RSC30
M01580_2.00
Saccharomyces cerevisiae
NNDCGSVNN

NNBSCGHNN
PBM
Zhu et al.(2009)
Rsc30
(Direct) (Direct)
RSC30
M07513_2.00
Saccharomyces cerevisiae
VSCGCGCS

SGCGCGSB
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0375.1
(Direct) (Direct)
RSC30
M08663_2.00
Saccharomyces cerevisiae
HNHVHCSCGCGCGSGNDVSVN

NBSBHNCSCGCGCGSGDBDND
Misc
DeBoer et al.(2011)
YHR056C_857
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RSC3
M00082_2.00
Saccharomyces cerevisiae
GCGCGCGG

CCGCGCGC
PBM
Badis et al.(2008)
RSC3_2035
0.537 0.816
RSC3
M01576_2.00
Saccharomyces cerevisiae
NNNNNSCGNN

NNCGSNNNNN
PBM
Zhu et al.(2009)
Rsc3
0.537 0.816
RSC3
M07509_2.00
Saccharomyces cerevisiae
NNVCGCG

CGCGBNN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0374.1
0.537 0.816
RSC3
M08655_2.00
Saccharomyces cerevisiae
NNVCGCG

CGCGBNN
Misc
DeBoer et al.(2011)
YDR303C_580
0.537 0.816
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00086_2.00 Zinc cluster 12 50
M01580_2.00 Zinc cluster 13 51

DNA Binding Domains

Protein ID Domain From To Sequence
YHR056C Zinc cluster 13 51

Links

Other Zinc cluster family TFs
Other Saccharomyces cerevisiae TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NAC019 Arabidopsis thaliana AT1G52890 D 0.000
NAC055 Arabidopsis thaliana AT3G15500 D 0.000
Bostr.28625s0149 Boechera stricta Bostr.28625s0149 I 0.000
Bostr.7867s0562 Boechera stricta Bostr.7867s0562 I 0.000
Cagra.0007s0097 Capsella grandiflora Cagra.0007s0097 I 0.000
Cagra.0570s0027 Capsella grandiflora Cagra.0570s0027 I 0.000
Cagra.0946s0025 Capsella grandiflora Cagra.0946s0025 I 0.000
Carubv10005353m.g Capsella rubella Carubv10005353m.g I 0.000
Carubv10009816m.g Capsella rubella Carubv10009816m.g I 0.000
Bostr.0124s0082 Boechera stricta Bostr.0124s0082 I 0.000
Aquca_024_00080 Aquilegia coerulea Aquca_024_00080 I 0.000
mgf013765m Mimulus guttatus mgf013765m I 0.000
mgf001766m Mimulus guttatus mgf001766m I 0.000
Cucsa.341800 Cucumis sativus Cucsa.341800 I 0.000
Cucsa.074610 Cucumis sativus Cucsa.074610 I 0.000
cassava42313.valid.m1 Manihot esculenta cassava42313.valid.m1 I 0.000
cassava2098.valid.m1 Manihot esculenta cassava2098.valid.m1 I 0.000
28219.m000090 Ricinus communis 28219.m000090 I 0.000
Carubv10014211m.g Capsella rubella Carubv10014211m.g I 0.000
Ciclev10008812m.g Citrus clementina Ciclev10008812m.g I 0.000
LjSGA_036303.1 Lotus japonicus LjSGA_036303.1 I 0.000
PK20135.1 Cannabis sativa PK20135.1 I 0.000
Thhalv10025818m.g Eutrema salsugineum Thhalv10025818m.g I 0.000
Thhalv10021174m.g Eutrema salsugineum Thhalv10021174m.g I 0.000
Thhalv10011676m.g Eutrema salsugineum Thhalv10011676m.g I 0.000
SapurV1A.1471s0010 Salix purpurea SapurV1A.1471s0010 I 0.000
SapurV1A.0864s0080 Salix purpurea SapurV1A.0864s0080 I 0.000
SapurV1A.0127s0020 Salix purpurea SapurV1A.0127s0020 I 0.000
orange1.1g019011m.g Citrus sinensis orange1.1g019011m.g I 0.000
MDP0000262032 Malus domestica MDP0000262032 I 0.000
MDP0000132623 Malus domestica MDP0000132623 I 0.000
Gorai.009G433200 Gossypium raimondii Gorai.009G433200 I 0.000
Gorai.002G073700 Gossypium raimondii Gorai.002G073700 I 0.000
gene31149-v1.0-hybrid Fragaria vesca gene31149-v1.0-hybrid I 0.000
evm.TU.supercontig_80.93 Carica papaya evm.TU.supercontig_80.93 I 0.000
Eucgr.F01093 Eucalyptus grandis Eucgr.F01093 I 0.000
Pm011603 Prunus mume Pm011603 I 0.000
Cla023770 Citrullus lanatus Cla023770 I 0.000
RD26 Arabidopsis lyrata fgenesh2_kg.7__1491__AT4G27410.3 I 0.000
ATNAC3 Arabidopsis lyrata fgenesh2_kg.3__1697__AT3G15500.1 I 0.000
ANAC019 Arabidopsis lyrata fgenesh2_kg.1__4367__AT1G52890.1 I 0.000
Bra027238 Brassica rapa Bra027238 I 0.000
Bra026353 Brassica rapa Bra026353 I 0.000
Bra021113 Brassica rapa Bra021113 I 0.000
Bra019052 Brassica rapa Bra019052 I 0.000
Bra018998 Brassica rapa Bra018998 I 0.000
Bra001596 Brassica rapa Bra001596 I 0.000
Bo7g111390 Brassica oleracea Bo7g111390 I 0.000
Bo6g030940 Brassica oleracea Bo6g030940 I 0.000
Bo5g127040 Brassica oleracea Bo5g127040 I 0.000
Bo3g066850 Brassica oleracea Bo3g066850 I 0.000
Bo1g128450 Brassica oleracea Bo1g128450 I 0.000
Bo1g048300 Brassica oleracea Bo1g048300 I 0.000
GLYMA06G38410 Glycine max GLYMA06G38410 I 0.000
GLYMA12G22880 Glycine max GLYMA12G22880 I 0.000
GLYMA12G35000 Glycine max GLYMA12G35000 I 0.000
Cla011949 Citrullus lanatus Cla011949 I 0.000
Ca_21186 Cicer arietinum Ca_21186 I 0.000
VIT_19s0014g03290 Vitis vinifera VIT_19s0014g03290 I 0.000
TCM_031364 Theobroma cacao TCM_031364 I 0.000
Solyc12g013620.1 Solanum lycopersicum Solyc12g013620.1 I 0.000
Solyc07g063410.2 Solanum lycopersicum Solyc07g063410.2 I 0.000
PRUPE_ppa008301mg Prunus persica PRUPE_ppa008301mg I 0.000
POPTR_1659s00200 Populus trichocarpa POPTR_1659s00200 I 0.000
POPTR_0011s12400 Populus trichocarpa POPTR_0011s12400 I 0.000
POPTR_0001s41460 Populus trichocarpa POPTR_0001s41460 I 0.000
PGSC0003DMG400019294 Solanum tuberosum PGSC0003DMG400019294 I 0.000
PGSC0003DMG400015342 Solanum tuberosum PGSC0003DMG400015342 I 0.000
MTR_8g059170 Medicago truncatula MTR_8g059170 I 0.000
MTR_2g079990 Medicago truncatula MTR_2g079990 I 0.000
GLYMA13G35550 Glycine max GLYMA13G35550 I 0.000
RD26 Arabidopsis thaliana AT4G27410 I 0.000