CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RGT1
(
Saccharomyces cerevisiae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
YKL038W
T388357_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RGT1
M00092_2.00
Saccharomyces cerevisiae
CGGRDNWWHN
NDWWNHYCCG
PBM
Badis et al.(2008)
RGT1_2131
(Direct)
(Direct)
RGT1
M01585_2.00
Saccharomyces cerevisiae
HCGGADNWWN
NWWNHTCCGD
PBM
Zhu et al.(2009)
Rgt1
(Direct)
(Direct)
RGT1
M07518_2.00
Saccharomyces cerevisiae
NCGGADNAWHN
NDWTNHTCCGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0367.1
(Direct)
(Direct)
RGT1
M08673_2.00
Saccharomyces cerevisiae
NDNNNYCGGAWWAAYHNNNN
NNNNDRTTWWTCCGRNNNHN
Misc
DeBoer et al.(2011)
YKL038W_803
(Direct)
(Direct)
RGT1
M11480_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RGT1_Q5
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.537
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00092_2.00
Zinc cluster
44
85
RACDQCRKKKIKCDYKDEKGVCSNCQRNGDRCSFDRVPLKRG
M01585_2.00
Zinc cluster
45
86
RACDQCRKKKIKCDYKDEKGVCSNCQRNGDRCSFDRVPLKRG
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YKL038W
Zinc cluster
45
86
RACDQCRKKKIKCDYKDEKGVCSNCQRNGDRCSFDRVPLKRG
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces cerevisiae
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy