CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
YLR278C
(
Saccharomyces cerevisiae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
YLR278C
T388366_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YLR278C
M00099_2.00
Saccharomyces cerevisiae
NNNCGGVVNN
NNBBCCGNNN
PBM
Badis et al.(2008)
YLR278C_2147
(Direct)
(Direct)
YLR278C
M00926_2.00
Saccharomyces cerevisiae
NBCGGAGTTN
NAACTCCGVN
PBM
Gordan et al.(2011)
Ylr278c
(Direct)
(Direct)
YLR278C
M07525_2.00
Saccharomyces cerevisiae
NCGGAGWW
WWCTCCGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0430.1
(Direct)
(Direct)
YLR278C
M08683_2.00
Saccharomyces cerevisiae
NCGGAGWW
WWCTCCGN
Misc
DeBoer et al.(2011)
YLR278C_589
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.537
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00099_2.00
Zinc cluster
38
76
RSCLLCRRRKQRCDHKLPSCTACLKAGIKCVQPSKYSSS
M00926_2.00
Zinc cluster
1
39
RSCLLCRRRKQRCDHKLPSCTACLKAGIKCVQPSKYSSS
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YLR278C
Zinc cluster
39
77
RSCLLCRRRKQRCDHKLPSCTACLKAGIKCVQPSKYSSS
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces cerevisiae
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy