CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
RDS2
(
Saccharomyces cerevisiae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
YPL133C
T388379_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RDS2
M00109_2.00
Saccharomyces cerevisiae
NDCGGRNNN
NNNYCCGHN
PBM
Badis et al.(2008)
RDS2_2062
(Direct)
(Direct)
RDS2
M01598_2.00
Saccharomyces cerevisiae
NNDCGGRNNN
NNNYCCGHNN
PBM
Zhu et al.(2009)
Rds2
(Direct)
(Direct)
RDS2
M07536_2.00
Saccharomyces cerevisiae
VTCGGGG
CCCCGAB
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0362.1
(Direct)
(Direct)
RDS2
M08696_2.00
Saccharomyces cerevisiae
NCGGMTNAAHGGRN
NYCCDTTNAKCCGN
Misc
DeBoer et al.(2011)
YPL133C_757
(Direct)
(Direct)
RDS2
M08697_2.00
Saccharomyces cerevisiae
NNNNNNTCGGRWTTTNNNNNB
VNNNNNAAAWYCCGANNNNNN
Misc
DeBoer et al.(2011)
YPL133C_822
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.537
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00109_2.00
Zinc cluster
14
48
KTCLFCKRSHVVCDKQRPCSRCVKRDIAHLCREDD
M01598_2.00
Zinc cluster
15
49
KTCLFCKRSHVVCDKQRPCSRCVKRDIAHLCREDD
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YPL133C
Zinc cluster
15
49
KTCLFCKRSHVVCDKQRPCSRCVKRDIAHLCREDD
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces cerevisiae
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy