CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw1.2.1218.1
(
Mycosphaerella graminicola
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
e_gw1.2.1218.1
T389398_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
vad-5
M02619_2.00
Neurospora crassa
NNNHCGDNNN
NNNHCGDNNN
PBM
Weirauch et al.(2014)
pTH8350
0.682
0.923
vad-5
M02620_2.00
Neurospora crassa
NNYCGGNWN
NWNCCGRNN
PBM
Weirauch et al.(2014)
pTH8902
0.682
0.923
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.2.1218.1
Zinc cluster
26
65
PSCDACRERKVKCDATDANSCSECSSRGVKCQFTKETNRR
Links
Other
Zinc cluster
family TFs
Other
Mycosphaerella graminicola
TFs
125 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy