estExt_genewise1_worm.C_chr_3.11235 (Pichia stipitis)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 estExt_genewise1_worm.C_chr_3.11235 T389976_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ASG1
M00088_2.00
Saccharomyces cerevisiae
CGGRDNN

NNHYCCG
PBM
Badis et al.(2008)
ASG1_2140
0.571 0.763
ASG1
M01581_2.00
Saccharomyces cerevisiae
NCGGNDNN

NNHNCCGN
PBM
Zhu et al.(2009)
Asg1
0.571 0.763
ASG1
M07515_2.00
Saccharomyces cerevisiae
CCGGAW

WTCCGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0275.1
0.571 0.763
ASG1
M08666_2.00
Saccharomyces cerevisiae
CCGGAW

WTCCGG
Misc
DeBoer et al.(2011)
YIL130W_529
0.571 0.763
ASG1
M08667_2.00
Saccharomyces cerevisiae
CCGGVWMHMDBCCGGD

HCCGGVHKDKWBCCGG
Misc
DeBoer et al.(2011)
YIL130W_807
0.571 0.763
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_genewise1_worm.C_chr_3.11235 Zinc cluster 62 99

Links

Other Zinc cluster family TFs
Other Pichia stipitis TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PICST_77168 Scheffersomyces stipitis PICST_77168 I 0.683
SPAPADRAFT_49410 Spathaspora passalidarum SPAPADRAFT_49410 I 0.669
CLUG_02747 Clavispora lusitaniae CLUG_02747 I 0.651
CLUG_02747 Candida lusitaniae CLUG_02747 I 0.651
GNLVRS01_PISO0F02997g Millerozyma farinosa GNLVRS01_PISO0F02997g I 0.639
DEHA2A12892g Debaryomyces hansenii DEHA2A12892g I 0.639
GNLVRS01_PISO0J02957g Millerozyma farinosa GNLVRS01_PISO0J02957g I 0.639
CTRG_00843 Candida tropicalis CTRG_00843 I 0.629
G210_0569 Candida maltosa G210_0569 I 0.629
CaO19.7800 Candida albicans CaO19.7800 I 0.629
CD36_27510 Candida dubliniensis CD36_27510 I 0.629
CaO19.166 Candida albicans CaO19.166 I 0.629
PGUG_04028 Meyerozyma guilliermondii PGUG_04028 I 0.627
PGUG_04028 Candida guilliermondii PGUG_04028 I 0.627
YALI0_C22990g Yarrowia lipolytica YALI0_C22990g I 0.604
CTRG_05934 Candida tropicalis CTRG_05934 I 0.602
CANTEDRAFT_104606 Candida tenuis CANTEDRAFT_104606 I 0.600
LELG_00217 Lodderomyces elongisporus LELG_00217 I 0.597
CORT_0A02680 Candida orthopsilosis CORT_0A02680 I 0.597
CPAG_01303 Candida parapsilosis CPAG_01303 I 0.597
SAKL0E08998g Lachancea kluyveri SAKL0E08998g I 0.574
Kwal_4754 Kluyveromyces waltii Kwal_4754 I 0.574
TBLA_0G02610 Tetrapisispora blattae TBLA_0G02610 I 0.574
KLTH0G09108g Kluyveromyces thermotolerans KLTH0G09108g I 0.574
TDEL_0C04480 Torulaspora delbrueckii TDEL_0C04480 I 0.574
NDAI_0B03850 Naumovozyma dairenensis NDAI_0B03850 I 0.574
KUCA_T00002124001 Kuraishia capsulata KUCA_T00002124001 I 0.574
KAFR_0J01710 Kazachstania africana KAFR_0J01710 I 0.574
BN7_630 Wickerhamomyces ciferrii BN7_630 I 0.574
KLTH0G09108g Lachancea thermotolerans KLTH0G09108g I 0.574
KLLA0_F04609g Kluyveromyces lactis KLLA0_F04609g I 0.574
Kpol_1039p11 Vanderwaltozyma polyspora Kpol_1039p11 I 0.574
LALA0_S04e08614g Lachancea lanzarotensis LALA0_S04e08614g I 0.574
CAGL0G08844g Candida glabrata CAGL0G08844g I 0.571
11848_Multiple Saccharomyces bayanus 11848_Multiple I 0.571
SAKL0C03938g Lachancea kluyveri SAKL0C03938g I 0.571
10716_YIL130W Saccharomyces paradoxus 10716_YIL130W I 0.571
Scas_Contig662.8 Saccharomyces castellii Scas_Contig662.8 I 0.571
SU7_1579 Saccharomyces arboricola SU7_1579 I 0.571
KNAG_0E01760 Kazachstania naganishii KNAG_0E01760 I 0.571
NCAS_0B06550 Naumovozyma castellii NCAS_0B06550 I 0.571
ASG1 Saccharomyces cerevisiae YIL130W D 0.571
TPHA_0F01380 Tetrapisispora phaffii TPHA_0F01380 I 0.557
10452_Multiple Saccharomyces mikatae 10452_Multiple I 0.547
SCHCODRAFT_255656 Schizophyllum commune SCHCODRAFT_255656 N 0.545
SPBR_04687 Sporothrix brasiliensis SPBR_04687 N 0.539