CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
estExt_genewise1_worm.C_chr_3.11235
(
Pichia stipitis
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
estExt_genewise1_worm.C_chr_3.11235
T389976_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ASG1
M00088_2.00
Saccharomyces cerevisiae
CGGRDNN
NNHYCCG
PBM
Badis et al.(2008)
ASG1_2140
0.571
0.763
ASG1
M01581_2.00
Saccharomyces cerevisiae
NCGGNDNN
NNHNCCGN
PBM
Zhu et al.(2009)
Asg1
0.571
0.763
ASG1
M07515_2.00
Saccharomyces cerevisiae
CCGGAW
WTCCGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0275.1
0.571
0.763
ASG1
M08666_2.00
Saccharomyces cerevisiae
CCGGAW
WTCCGG
Misc
DeBoer et al.(2011)
YIL130W_529
0.571
0.763
ASG1
M08667_2.00
Saccharomyces cerevisiae
CCGGVWMHMDBCCGGD
HCCGGVHKDKWBCCGG
Misc
DeBoer et al.(2011)
YIL130W_807
0.571
0.763
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_genewise1_worm.C_chr_3.11235
Zinc cluster
62
99
RACDNCRQKKVKCDGKQPCIHCTVYSYKCTYDQPNVRN
Links
Other
Zinc cluster
family TFs
Other
Pichia stipitis
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PICST_77168
Scheffersomyces stipitis
PICST_77168
I
0.683
SPAPADRAFT_49410
Spathaspora passalidarum
SPAPADRAFT_49410
I
0.669
CLUG_02747
Clavispora lusitaniae
CLUG_02747
I
0.651
CLUG_02747
Candida lusitaniae
CLUG_02747
I
0.651
GNLVRS01_PISO0F02997g
Millerozyma farinosa
GNLVRS01_PISO0F02997g
I
0.639
DEHA2A12892g
Debaryomyces hansenii
DEHA2A12892g
I
0.639
GNLVRS01_PISO0J02957g
Millerozyma farinosa
GNLVRS01_PISO0J02957g
I
0.639
CTRG_00843
Candida tropicalis
CTRG_00843
I
0.629
G210_0569
Candida maltosa
G210_0569
I
0.629
CaO19.7800
Candida albicans
CaO19.7800
I
0.629
CD36_27510
Candida dubliniensis
CD36_27510
I
0.629
CaO19.166
Candida albicans
CaO19.166
I
0.629
PGUG_04028
Meyerozyma guilliermondii
PGUG_04028
I
0.627
PGUG_04028
Candida guilliermondii
PGUG_04028
I
0.627
YALI0_C22990g
Yarrowia lipolytica
YALI0_C22990g
I
0.604
CTRG_05934
Candida tropicalis
CTRG_05934
I
0.602
CANTEDRAFT_104606
Candida tenuis
CANTEDRAFT_104606
I
0.600
LELG_00217
Lodderomyces elongisporus
LELG_00217
I
0.597
CORT_0A02680
Candida orthopsilosis
CORT_0A02680
I
0.597
CPAG_01303
Candida parapsilosis
CPAG_01303
I
0.597
SAKL0E08998g
Lachancea kluyveri
SAKL0E08998g
I
0.574
Kwal_4754
Kluyveromyces waltii
Kwal_4754
I
0.574
TBLA_0G02610
Tetrapisispora blattae
TBLA_0G02610
I
0.574
KLTH0G09108g
Kluyveromyces thermotolerans
KLTH0G09108g
I
0.574
TDEL_0C04480
Torulaspora delbrueckii
TDEL_0C04480
I
0.574
NDAI_0B03850
Naumovozyma dairenensis
NDAI_0B03850
I
0.574
KUCA_T00002124001
Kuraishia capsulata
KUCA_T00002124001
I
0.574
KAFR_0J01710
Kazachstania africana
KAFR_0J01710
I
0.574
BN7_630
Wickerhamomyces ciferrii
BN7_630
I
0.574
KLTH0G09108g
Lachancea thermotolerans
KLTH0G09108g
I
0.574
KLLA0_F04609g
Kluyveromyces lactis
KLLA0_F04609g
I
0.574
Kpol_1039p11
Vanderwaltozyma polyspora
Kpol_1039p11
I
0.574
LALA0_S04e08614g
Lachancea lanzarotensis
LALA0_S04e08614g
I
0.574
CAGL0G08844g
Candida glabrata
CAGL0G08844g
I
0.571
11848_Multiple
Saccharomyces bayanus
11848_Multiple
I
0.571
SAKL0C03938g
Lachancea kluyveri
SAKL0C03938g
I
0.571
10716_YIL130W
Saccharomyces paradoxus
10716_YIL130W
I
0.571
Scas_Contig662.8
Saccharomyces castellii
Scas_Contig662.8
I
0.571
SU7_1579
Saccharomyces arboricola
SU7_1579
I
0.571
KNAG_0E01760
Kazachstania naganishii
KNAG_0E01760
I
0.571
NCAS_0B06550
Naumovozyma castellii
NCAS_0B06550
I
0.571
ASG1
Saccharomyces cerevisiae
YIL130W
D
0.571
TPHA_0F01380
Tetrapisispora phaffii
TPHA_0F01380
I
0.557
10452_Multiple
Saccharomyces mikatae
10452_Multiple
I
0.547
SCHCODRAFT_255656
Schizophyllum commune
SCHCODRAFT_255656
N
0.545
SPBR_04687
Sporothrix brasiliensis
SPBR_04687
N
0.539