fgenesh1_pg.sca_3_chr4_2_0000651 (Nectria haematococca)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 fgenesh1_pg.sca_3_chr4_2_0000651 T390239_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ANIA_01729
M01398_2.00
Aspergillus nidulans
NVCCGGNWN

NWNCCGGBN
PBM
Lambert et al.(2019)
pEX0275
0.558 0.737
ASG1
M00088_2.00
Saccharomyces cerevisiae
CGGRDNN

NNHYCCG
PBM
Badis et al.(2008)
ASG1_2140
0.539 0.500
ASG1
M01581_2.00
Saccharomyces cerevisiae
NCGGNDNN

NNHNCCGN
PBM
Zhu et al.(2009)
Asg1
0.539 0.500
ASG1
M07515_2.00
Saccharomyces cerevisiae
CCGGAW

WTCCGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0275.1
0.539 0.500
ASG1
M08666_2.00
Saccharomyces cerevisiae
CCGGAW

WTCCGG
Misc
DeBoer et al.(2011)
YIL130W_529
0.539 0.500
ASG1
M08667_2.00
Saccharomyces cerevisiae
CCGGVWMHMDBCCGGD

HCCGGVHKDKWBCCGG
Misc
DeBoer et al.(2011)
YIL130W_807
0.539 0.500
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.sca_3_chr4_2_0000651 Zinc cluster 26 63

Links

Other Zinc cluster family TFs
Other Nectria haematococca TFs

Invalid Input OrderBy

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action