CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pm.sca_6_chr9_2_0000348
(
Nectria haematococca
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
fgenesh1_pm.sca_6_chr9_2_0000348
T390360_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FGRRES_05958
M01414_2.00
Fusarium graminearum
NNCGGAWDTR
YAHWTCCGNN
PBM
Lambert et al.(2019)
pTH11380
0.636
0.895
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.sca_6_chr9_2_0000348
Zinc cluster
10
47
KACQECRVKKIKCNGETPCQNCRLRSLGCVYREKARNR
Links
Other
Zinc cluster
family TFs
Other
Nectria haematococca
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy