CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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col-22
(
Neurospora crassa
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
NCU04390
T390598_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
col-22
M01424_2.00
Neurospora crassa
NNNSBCCGGVVN
NBBCCGGVSNNN
PBM
Lambert et al.(2019)
pTH8929
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.537
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01424_2.00
Zinc cluster
52
90
HSCVLCQQRKVRCDKQKPCANCVKAGVECRVVPPQPPRR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU04390.1
Zinc cluster
56
94
HSCVLCQQRKVRCDKQKPCANCVKAGVECRVVPPQPPRR
NCU04390.2
Zinc cluster
56
94
HSCVLCQQRKVRCDKQKPCANCVKAGVECRVVPPQPPRR
NCU04390.3
Zinc cluster
56
94
HSCVLCQQRKVRCDKQKPCANCVKAGVECRVVPPQPPRR
Links
Other
Zinc cluster
family TFs
Other
Neurospora crassa
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy