CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig625.5
(
Saccharomyces castellii
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
Scas_Contig625.5
T390693_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RGT1
M00092_2.00
Saccharomyces cerevisiae
CGGRDNWWHN
NDWWNHYCCG
PBM
Badis et al.(2008)
RGT1_2131
0.587
0.775
RGT1
M01585_2.00
Saccharomyces cerevisiae
HCGGADNWWN
NWWNHTCCGD
PBM
Zhu et al.(2009)
Rgt1
0.587
0.775
RGT1
M07518_2.00
Saccharomyces cerevisiae
NCGGADNAWHN
NDWTNHTCCGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0367.1
0.587
0.775
RGT1
M08673_2.00
Saccharomyces cerevisiae
NDNNNYCGGAWWAAYHNNNN
NNNNDRTTWWTCCGRNNNHN
Misc
DeBoer et al.(2011)
YKL038W_803
0.587
0.775
RGT1
M11480_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RGT1_Q5
0.587
0.775
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig625.5
Zinc cluster
73
114
RACDQCRKKKIKCDFSEEKTLCSNCQRNGEKCTFERVPLKRG
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces castellii
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy